Hb_009780_050

Information

Type -
Description -
Location Contig9780: 37763-44682
Sequence    

Annotation

kegg
ID pop:POPTR_0005s14550g
description hypothetical protein
nr
ID XP_012077799.1
description PREDICTED: glutathione S-transferase DHAR3, chloroplastic [Jatropha curcas]
swissprot
ID Q8LE52
description Glutathione S-transferase DHAR3, chloroplastic OS=Arabidopsis thaliana GN=DHAR3 PE=1 SV=1
trembl
ID A0A067KAA5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13436 PE=4 SV=1
Gene Ontology
ID GO:0016491
description glutathione s-transferase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64245: 39336-39705
cDNA
(Sanger)
(ID:Location)		 012_H02.ab1: 37726-38038

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009780_050 0.0 - - PREDICTED: glutathione S-transferase DHAR3, chloroplastic [Jatropha curcas]
2 Hb_000176_010 0.074371258 - - PREDICTED: 50S ribosomal protein L35, chloroplastic [Jatropha curcas]
3 Hb_001711_120 0.1054841096 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
4 Hb_000167_050 0.1079435789 - - PREDICTED: uncharacterized protein LOC105641106 [Jatropha curcas]
5 Hb_065525_120 0.1141727131 - - dtdp-glucose 4-6-dehydratase, putative [Ricinus communis]
6 Hb_002053_010 0.1147993975 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
7 Hb_001124_180 0.1159695678 - - PREDICTED: uncharacterized protein LOC105171432 [Sesamum indicum]
8 Hb_000723_290 0.1188044737 - - calcium lipid binding protein, putative [Ricinus communis]
9 Hb_027298_010 0.119042478 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001789_200 0.1242238485 - - PREDICTED: sec-independent protein translocase protein TATB, chloroplastic [Jatropha curcas]
11 Hb_003602_060 0.1255272433 - - PREDICTED: phosphoglycerate mutase-like protein 1 [Jatropha curcas]
12 Hb_000392_550 0.1262425783 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 6, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_005489_090 0.1269200842 - - PREDICTED: peptidyl-tRNA hydrolase ICT1, mitochondrial [Jatropha curcas]
14 Hb_001369_790 0.1270963239 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic [Jatropha curcas]
15 Hb_154038_020 0.1281198828 - - hypothetical protein JCGZ_05648 [Jatropha curcas]
16 Hb_000032_370 0.1314858411 - - PREDICTED: nucleoside diphosphate kinase III, chloroplastic/mitochondrial-like [Citrus sinensis]
17 Hb_001322_230 0.1332705635 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]
18 Hb_000394_180 0.1339895475 - - PREDICTED: uncharacterized protein LOC105636995 [Jatropha curcas]
19 Hb_002374_300 0.1342338031 - - hypothetical protein JCGZ_12140 [Jatropha curcas]
20 Hb_010577_040 0.1365395698 - - PREDICTED: uncharacterized protein LOC105643738 [Jatropha curcas]

Gene co-expression network

sample Hb_009780_050 Hb_009780_050 Hb_000176_010 Hb_000176_010 Hb_009780_050--Hb_000176_010 Hb_001711_120 Hb_001711_120 Hb_009780_050--Hb_001711_120 Hb_000167_050 Hb_000167_050 Hb_009780_050--Hb_000167_050 Hb_065525_120 Hb_065525_120 Hb_009780_050--Hb_065525_120 Hb_002053_010 Hb_002053_010 Hb_009780_050--Hb_002053_010 Hb_001124_180 Hb_001124_180 Hb_009780_050--Hb_001124_180 Hb_000176_010--Hb_001124_180 Hb_000627_300 Hb_000627_300 Hb_000176_010--Hb_000627_300 Hb_000042_290 Hb_000042_290 Hb_000176_010--Hb_000042_290 Hb_002150_130 Hb_002150_130 Hb_000176_010--Hb_002150_130 Hb_000176_010--Hb_000167_050 Hb_000510_030 Hb_000510_030 Hb_001711_120--Hb_000510_030 Hb_001711_120--Hb_002053_010 Hb_001629_090 Hb_001629_090 Hb_001711_120--Hb_001629_090 Hb_000983_070 Hb_000983_070 Hb_001711_120--Hb_000983_070 Hb_000392_550 Hb_000392_550 Hb_001711_120--Hb_000392_550 Hb_001369_790 Hb_001369_790 Hb_001711_120--Hb_001369_790 Hb_000638_160 Hb_000638_160 Hb_000167_050--Hb_000638_160 Hb_000394_180 Hb_000394_180 Hb_000167_050--Hb_000394_180 Hb_000723_290 Hb_000723_290 Hb_000167_050--Hb_000723_290 Hb_005846_030 Hb_005846_030 Hb_000167_050--Hb_005846_030 Hb_000032_370 Hb_000032_370 Hb_065525_120--Hb_000032_370 Hb_027298_010 Hb_027298_010 Hb_065525_120--Hb_027298_010 Hb_154038_020 Hb_154038_020 Hb_065525_120--Hb_154038_020 Hb_001671_030 Hb_001671_030 Hb_065525_120--Hb_001671_030 Hb_007441_080 Hb_007441_080 Hb_065525_120--Hb_007441_080 Hb_001789_200 Hb_001789_200 Hb_002053_010--Hb_001789_200 Hb_008695_200 Hb_008695_200 Hb_002053_010--Hb_008695_200 Hb_016219_030 Hb_016219_030 Hb_002053_010--Hb_016219_030 Hb_002053_010--Hb_001369_790 Hb_004440_060 Hb_004440_060 Hb_002053_010--Hb_004440_060 Hb_000086_080 Hb_000086_080 Hb_002053_010--Hb_000086_080 Hb_005489_090 Hb_005489_090 Hb_001124_180--Hb_005489_090 Hb_003935_080 Hb_003935_080 Hb_001124_180--Hb_003935_080 Hb_005725_220 Hb_005725_220 Hb_001124_180--Hb_005725_220 Hb_001124_180--Hb_000042_290 Hb_000594_100 Hb_000594_100 Hb_001124_180--Hb_000594_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.92502 9.35696 44.3091 38.5066 2.34766 8.62968
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.2147 43.8233 18.7016 9.07299 58.511

CAGE analysis