Hb_009780_080

Information

Type -
Description -
Location Contig9780: 87209-104094
Sequence    

Annotation

kegg
ID pop:POPTR_0005s14610g
description hypothetical protein
nr
ID XP_012077804.1
description PREDICTED: valine--tRNA ligase, mitochondrial isoform X2 [Jatropha curcas]
swissprot
ID Q3AF87
description Valine--tRNA ligase OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901) GN=valS PE=3 SV=1
trembl
ID A0A067KDU4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13438 PE=3 SV=1
Gene Ontology
ID GO:0005737
description valine--trna mitochondrial isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009780_080 0.0 - - PREDICTED: valine--tRNA ligase, mitochondrial isoform X2 [Jatropha curcas]
2 Hb_132998_020 0.2131164869 - - acyl carrier protein 1, chloroplastic-like [Jatropha curcas]
3 Hb_001507_100 0.2176033961 - - cytochrome P450, putative [Ricinus communis]
4 Hb_008983_010 0.2258624735 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
5 Hb_079268_010 0.2268740015 - - -
6 Hb_089497_010 0.2271992491 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15-like isoform X3 [Jatropha curcas]
7 Hb_138585_110 0.2374783904 - - -
8 Hb_000087_050 0.23915406 - - hypothetical protein JCGZ_16227 [Jatropha curcas]
9 Hb_000454_060 0.2444476758 - - Uncharacterized protein TCM_006778 [Theobroma cacao]
10 Hb_003160_020 0.2456581864 - - PREDICTED: uncharacterized protein LOC105639457 [Jatropha curcas]
11 Hb_112023_010 0.2511437648 - - hypothetical protein EUGRSUZ_C03826 [Eucalyptus grandis]
12 Hb_004525_060 0.2512448181 - - -
13 Hb_005333_150 0.2555608169 - - hypothetical protein POPTR_0002s10520g [Populus trichocarpa]
14 Hb_004230_040 0.2575015005 - - conserved hypothetical protein [Ricinus communis]
15 Hb_006922_060 0.2586918786 - - calcineurin B, putative [Ricinus communis]
16 Hb_006111_080 0.2587696915 - - hypothetical protein JCGZ_18070 [Jatropha curcas]
17 Hb_002301_360 0.259414114 - - hypothetical protein CICLE_v10017252mg [Citrus clementina]
18 Hb_002236_050 0.2602705067 - - -
19 Hb_011861_120 0.2614235769 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
20 Hb_000317_400 0.2616670521 transcription factor TF Family: zf-HD conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_009780_080 Hb_009780_080 Hb_132998_020 Hb_132998_020 Hb_009780_080--Hb_132998_020 Hb_001507_100 Hb_001507_100 Hb_009780_080--Hb_001507_100 Hb_008983_010 Hb_008983_010 Hb_009780_080--Hb_008983_010 Hb_079268_010 Hb_079268_010 Hb_009780_080--Hb_079268_010 Hb_089497_010 Hb_089497_010 Hb_009780_080--Hb_089497_010 Hb_138585_110 Hb_138585_110 Hb_009780_080--Hb_138585_110 Hb_132998_020--Hb_079268_010 Hb_003446_050 Hb_003446_050 Hb_132998_020--Hb_003446_050 Hb_005690_020 Hb_005690_020 Hb_132998_020--Hb_005690_020 Hb_000326_060 Hb_000326_060 Hb_132998_020--Hb_000326_060 Hb_000454_060 Hb_000454_060 Hb_132998_020--Hb_000454_060 Hb_003160_020 Hb_003160_020 Hb_001507_100--Hb_003160_020 Hb_001104_240 Hb_001104_240 Hb_001507_100--Hb_001104_240 Hb_001507_100--Hb_089497_010 Hb_001507_100--Hb_138585_110 Hb_004242_190 Hb_004242_190 Hb_001507_100--Hb_004242_190 Hb_112023_010 Hb_112023_010 Hb_001507_100--Hb_112023_010 Hb_000116_230 Hb_000116_230 Hb_008983_010--Hb_000116_230 Hb_008983_010--Hb_079268_010 Hb_000109_240 Hb_000109_240 Hb_008983_010--Hb_000109_240 Hb_008983_010--Hb_089497_010 Hb_027428_030 Hb_027428_030 Hb_008983_010--Hb_027428_030 Hb_013839_010 Hb_013839_010 Hb_079268_010--Hb_013839_010 Hb_137068_010 Hb_137068_010 Hb_079268_010--Hb_137068_010 Hb_005568_080 Hb_005568_080 Hb_079268_010--Hb_005568_080 Hb_079268_010--Hb_003446_050 Hb_000317_400 Hb_000317_400 Hb_079268_010--Hb_000317_400 Hb_111198_020 Hb_111198_020 Hb_089497_010--Hb_111198_020 Hb_089497_010--Hb_112023_010 Hb_002400_400 Hb_002400_400 Hb_089497_010--Hb_002400_400 Hb_004136_040 Hb_004136_040 Hb_089497_010--Hb_004136_040 Hb_166236_010 Hb_166236_010 Hb_089497_010--Hb_166236_010 Hb_004355_030 Hb_004355_030 Hb_089497_010--Hb_004355_030 Hb_000796_250 Hb_000796_250 Hb_138585_110--Hb_000796_250 Hb_001529_050 Hb_001529_050 Hb_138585_110--Hb_001529_050 Hb_004230_040 Hb_004230_040 Hb_138585_110--Hb_004230_040 Hb_138585_110--Hb_001104_240 Hb_010334_020 Hb_010334_020 Hb_138585_110--Hb_010334_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.228888 0.313835 0.164205 0.0526943 0.123909 0.177517
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.51252 0.417695 0 0.697958 0

CAGE analysis