Hb_009785_010

Information

Type -
Description -
Location Contig9785: 2901-11443
Sequence    

Annotation

kegg
ID rcu:RCOM_1504830
description DNA binding protein, putative (EC:2.7.11.23)
nr
ID XP_012090626.1
description PREDICTED: uncharacterized protein LOC105648749 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JF72
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26397 PE=4 SV=1
Gene Ontology
ID GO:0005524
description dna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64260: 3288-3784 , PASA_asmbl_64262: 5367-5572 , PASA_asmbl_64265: 6557-6790
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009785_010 0.0 - - PREDICTED: uncharacterized protein LOC105648749 [Jatropha curcas]
2 Hb_005237_040 0.0606395581 - - PREDICTED: uncharacterized protein LOC105630923 [Jatropha curcas]
3 Hb_004884_200 0.0612844097 - - PREDICTED: ferritin-3, chloroplastic [Jatropha curcas]
4 Hb_014037_010 0.0758483555 - - PREDICTED: uncharacterized protein LOC105641871 [Jatropha curcas]
5 Hb_006711_020 0.0861072252 - - hypothetical protein JCGZ_07258 [Jatropha curcas]
6 Hb_000236_050 0.0914130366 - - phosphate transporter [Manihot esculenta]
7 Hb_002391_350 0.0947356393 - - PREDICTED: uncharacterized protein LOC105647080 [Jatropha curcas]
8 Hb_009627_040 0.1029890255 - - Lipase class 3-related protein, putative [Theobroma cacao]
9 Hb_000010_200 0.1038125962 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
10 Hb_002686_390 0.1087847997 - - PREDICTED: uncharacterized protein LOC105647789 [Jatropha curcas]
11 Hb_005211_090 0.1114497734 - - PREDICTED: aluminum-activated malate transporter 4-like isoform X1 [Jatropha curcas]
12 Hb_182021_010 0.1115707352 - - sucrose transporter 4 [Hevea brasiliensis]
13 Hb_000011_120 0.1136571591 - - PREDICTED: ATPase 10, plasma membrane-type-like [Populus euphratica]
14 Hb_010519_020 0.1142731724 - - hypothetical protein JCGZ_19028 [Jatropha curcas]
15 Hb_175758_010 0.1172169653 - - PREDICTED: aspartic proteinase A1-like isoform X2 [Jatropha curcas]
16 Hb_000317_220 0.119269885 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001421_010 0.1228379752 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator-like APRR2 isoform X1 [Jatropha curcas]
18 Hb_007123_020 0.1257412056 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HOX3 [Jatropha curcas]
19 Hb_000740_130 0.1275441612 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
20 Hb_001514_210 0.1283668194 - - hypothetical protein VITISV_012133 [Vitis vinifera]

Gene co-expression network

sample Hb_009785_010 Hb_009785_010 Hb_005237_040 Hb_005237_040 Hb_009785_010--Hb_005237_040 Hb_004884_200 Hb_004884_200 Hb_009785_010--Hb_004884_200 Hb_014037_010 Hb_014037_010 Hb_009785_010--Hb_014037_010 Hb_006711_020 Hb_006711_020 Hb_009785_010--Hb_006711_020 Hb_000236_050 Hb_000236_050 Hb_009785_010--Hb_000236_050 Hb_002391_350 Hb_002391_350 Hb_009785_010--Hb_002391_350 Hb_005237_040--Hb_014037_010 Hb_005237_040--Hb_004884_200 Hb_005237_040--Hb_000236_050 Hb_005237_040--Hb_006711_020 Hb_005237_040--Hb_002391_350 Hb_004884_200--Hb_002391_350 Hb_004884_200--Hb_014037_010 Hb_009627_040 Hb_009627_040 Hb_004884_200--Hb_009627_040 Hb_004884_200--Hb_006711_020 Hb_014037_010--Hb_000236_050 Hb_014037_010--Hb_002391_350 Hb_005211_090 Hb_005211_090 Hb_014037_010--Hb_005211_090 Hb_010519_020 Hb_010519_020 Hb_006711_020--Hb_010519_020 Hb_006711_020--Hb_002391_350 Hb_002686_390 Hb_002686_390 Hb_006711_020--Hb_002686_390 Hb_000236_050--Hb_004884_200 Hb_000236_050--Hb_005211_090 Hb_000236_050--Hb_002391_350 Hb_003807_020 Hb_003807_020 Hb_002391_350--Hb_003807_020 Hb_002391_350--Hb_009627_040 Hb_000335_050 Hb_000335_050 Hb_002391_350--Hb_000335_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.200395 13.7185 4.61629 7.14798 0.0765277 0.0639114
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.422804 0.124077 0.141379 29.9003 6.26375

CAGE analysis