Hb_009786_010

Information

Type -
Description -
Location Contig9786: 357-2596
Sequence    

Annotation

kegg
ID tcc:TCM_046061
description Phosphoprotein phosphatase
nr
ID XP_007099579.1
description Phosphoprotein phosphatase [Theobroma cacao]
swissprot
ID -
description -
trembl
ID S1SMT2
description Phosphoprotein phosphatase OS=Theobroma cacao GN=TCM_046061 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64268: 2164-2272
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009786_010 0.0 - - Phosphoprotein phosphatase [Theobroma cacao]
2 Hb_000072_160 0.1080441479 - - proline oxidase [Manihot esculenta]
3 Hb_003176_020 0.1136930321 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Vitis vinifera]
4 Hb_014361_130 0.1169354387 - - PREDICTED: uncharacterized protein LOC105639824 [Jatropha curcas]
5 Hb_003376_150 0.1211296307 - - PREDICTED: peroxidase 21 [Jatropha curcas]
6 Hb_002968_010 0.1234188514 - - PREDICTED: pectinesterase [Jatropha curcas]
7 Hb_081686_030 0.1275680558 - - hypothetical protein MIMGU_mgv11b016770mg [Erythranthe guttata]
8 Hb_000625_040 0.1320052292 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
9 Hb_145139_010 0.1322541911 - - PREDICTED: sugar transporter ERD6-like 5 isoform X1 [Vitis vinifera]
10 Hb_004122_020 0.1381712254 transcription factor TF Family: ERF ERF/AP2 domain-containing transcription factor [Manihot esculenta]
11 Hb_006052_040 0.1388094866 - - pyruvate decarboxylase [Hevea brasiliensis]
12 Hb_166155_010 0.1428137595 - - PREDICTED: metalloendoproteinase 1 [Jatropha curcas]
13 Hb_002097_210 0.1442635518 - - conserved hypothetical protein [Ricinus communis]
14 Hb_009247_030 0.1480909315 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Jatropha curcas]
15 Hb_006198_060 0.1500123718 - - PREDICTED: protein SULFUR DEFICIENCY-INDUCED 1 [Jatropha curcas]
16 Hb_005048_080 0.1505928965 - - PREDICTED: PAP-specific phosphatase HAL2-like [Jatropha curcas]
17 Hb_006615_190 0.1513119038 - - UDP-glycosyltransferase 1 [Linum usitatissimum]
18 Hb_000172_010 0.1529442271 - - PREDICTED: uncharacterized protein DDB_G0271670-like isoform X1 [Populus euphratica]
19 Hb_002475_010 0.154758122 - - hypothetical protein JCGZ_22530 [Jatropha curcas]
20 Hb_002820_090 0.1549743313 - - PREDICTED: WAT1-related protein At1g21890-like [Jatropha curcas]

Gene co-expression network

sample Hb_009786_010 Hb_009786_010 Hb_000072_160 Hb_000072_160 Hb_009786_010--Hb_000072_160 Hb_003176_020 Hb_003176_020 Hb_009786_010--Hb_003176_020 Hb_014361_130 Hb_014361_130 Hb_009786_010--Hb_014361_130 Hb_003376_150 Hb_003376_150 Hb_009786_010--Hb_003376_150 Hb_002968_010 Hb_002968_010 Hb_009786_010--Hb_002968_010 Hb_081686_030 Hb_081686_030 Hb_009786_010--Hb_081686_030 Hb_002272_070 Hb_002272_070 Hb_000072_160--Hb_002272_070 Hb_002329_030 Hb_002329_030 Hb_000072_160--Hb_002329_030 Hb_006615_190 Hb_006615_190 Hb_000072_160--Hb_006615_190 Hb_145139_010 Hb_145139_010 Hb_000072_160--Hb_145139_010 Hb_000072_160--Hb_002968_010 Hb_000072_160--Hb_014361_130 Hb_000286_180 Hb_000286_180 Hb_003176_020--Hb_000286_180 Hb_003176_020--Hb_003376_150 Hb_005048_080 Hb_005048_080 Hb_003176_020--Hb_005048_080 Hb_003176_020--Hb_000072_160 Hb_000465_380 Hb_000465_380 Hb_003176_020--Hb_000465_380 Hb_014361_130--Hb_002329_030 Hb_014361_130--Hb_002272_070 Hb_014361_130--Hb_145139_010 Hb_009247_030 Hb_009247_030 Hb_014361_130--Hb_009247_030 Hb_066320_010 Hb_066320_010 Hb_014361_130--Hb_066320_010 Hb_006052_040 Hb_006052_040 Hb_003376_150--Hb_006052_040 Hb_000398_200 Hb_000398_200 Hb_003376_150--Hb_000398_200 Hb_000625_040 Hb_000625_040 Hb_003376_150--Hb_000625_040 Hb_166155_010 Hb_166155_010 Hb_003376_150--Hb_166155_010 Hb_003376_150--Hb_005048_080 Hb_000656_370 Hb_000656_370 Hb_002968_010--Hb_000656_370 Hb_000101_140 Hb_000101_140 Hb_002968_010--Hb_000101_140 Hb_002968_010--Hb_145139_010 Hb_004122_020 Hb_004122_020 Hb_002968_010--Hb_004122_020 Hb_002475_010 Hb_002475_010 Hb_002968_010--Hb_002475_010 Hb_081686_030--Hb_000625_040 Hb_002820_090 Hb_002820_090 Hb_081686_030--Hb_002820_090 Hb_081686_030--Hb_166155_010 Hb_081686_030--Hb_003176_020 Hb_081686_030--Hb_003376_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 9.65671 0.246021 3.02999 0 0.0735114
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.53384 2.05255

CAGE analysis