Hb_009787_010

Information

Type -
Description -
Location Contig9787: 9544-10387
Sequence    

Annotation

kegg
ID pop:POPTR_0008s12950g
description POPTRDRAFT_719845; hypothetical protein
nr
ID XP_012072228.1
description PREDICTED: 10 kDa chaperonin [Jatropha curcas]
swissprot
ID P34893
description 10 kDa chaperonin OS=Arabidopsis thaliana GN=CPN10 PE=3 SV=1
trembl
ID A0A067KPJ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04705 PE=3 SV=1
Gene Ontology
ID GO:0005737
description 10 kda chaperonin-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64269: 9529-10360
cDNA
(Sanger)
(ID:Location)		 018_A06.ab1: 9531-10360 , 025_M19.ab1: 9555-10245 , 030_M09.ab1: 9531-10360 , 043_C13.ab1: 9564-10238 , 046_P24.ab1: 9529-10286 , 047_M08.ab1: 9563-10238

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009787_010 0.0 - - PREDICTED: 10 kDa chaperonin [Jatropha curcas]
2 Hb_001538_120 0.0989838211 - - PREDICTED: FAD-linked sulfhydryl oxidase ERV1 [Jatropha curcas]
3 Hb_001279_070 0.1075853221 - - PREDICTED: uncharacterized protein LOC105633300 [Jatropha curcas]
4 Hb_003528_060 0.1081834126 - - PREDICTED: uncharacterized protein LOC105638256 isoform X2 [Jatropha curcas]
5 Hb_171900_050 0.1106703125 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001247_350 0.1107573394 - - PREDICTED: anaphase-promoting complex subunit 11 [Jatropha curcas]
7 Hb_003058_070 0.1117481238 - - PREDICTED: uncharacterized protein LOC105628964 [Jatropha curcas]
8 Hb_000714_030 0.1129679516 - - Nucleosome assembly [Gossypium arboreum]
9 Hb_004440_050 0.1152233089 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
10 Hb_000483_160 0.1152859462 - - PREDICTED: 60S ribosomal protein L34 [Jatropha curcas]
11 Hb_000545_150 0.1157357989 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
12 Hb_000057_070 0.117118779 - - PREDICTED: 60S ribosomal protein L37-3-like [Cucumis sativus]
13 Hb_001946_210 0.1190471902 - - ribosomal protein l7ae, putative [Ricinus communis]
14 Hb_000365_380 0.1191596576 - - conserved hypothetical protein [Ricinus communis]
15 Hb_007229_070 0.1205470686 - - PREDICTED: UPF0565 protein C2orf69 [Jatropha curcas]
16 Hb_032202_090 0.1221282314 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Jatropha curcas]
17 Hb_002716_090 0.1223356293 - - U6 snRNA-associated Sm-like protein LSm8 [Hevea brasiliensis]
18 Hb_002742_050 0.1244949085 - - hypothetical protein CICLE_v10002863mg [Citrus clementina]
19 Hb_004117_290 0.1249515945 - - conserved hypothetical protein [Ricinus communis]
20 Hb_012573_070 0.1263770593 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_009787_010 Hb_009787_010 Hb_001538_120 Hb_001538_120 Hb_009787_010--Hb_001538_120 Hb_001279_070 Hb_001279_070 Hb_009787_010--Hb_001279_070 Hb_003528_060 Hb_003528_060 Hb_009787_010--Hb_003528_060 Hb_171900_050 Hb_171900_050 Hb_009787_010--Hb_171900_050 Hb_001247_350 Hb_001247_350 Hb_009787_010--Hb_001247_350 Hb_003058_070 Hb_003058_070 Hb_009787_010--Hb_003058_070 Hb_001538_120--Hb_003528_060 Hb_000057_070 Hb_000057_070 Hb_001538_120--Hb_000057_070 Hb_000545_150 Hb_000545_150 Hb_001538_120--Hb_000545_150 Hb_012573_070 Hb_012573_070 Hb_001538_120--Hb_012573_070 Hb_001818_020 Hb_001818_020 Hb_001538_120--Hb_001818_020 Hb_013405_090 Hb_013405_090 Hb_001538_120--Hb_013405_090 Hb_003874_020 Hb_003874_020 Hb_001279_070--Hb_003874_020 Hb_032202_090 Hb_032202_090 Hb_001279_070--Hb_032202_090 Hb_009767_120 Hb_009767_120 Hb_001279_070--Hb_009767_120 Hb_000365_380 Hb_000365_380 Hb_001279_070--Hb_000365_380 Hb_002893_060 Hb_002893_060 Hb_001279_070--Hb_002893_060 Hb_007432_080 Hb_007432_080 Hb_001279_070--Hb_007432_080 Hb_003528_060--Hb_012573_070 Hb_003927_140 Hb_003927_140 Hb_003528_060--Hb_003927_140 Hb_003528_060--Hb_013405_090 Hb_182305_020 Hb_182305_020 Hb_003528_060--Hb_182305_020 Hb_003528_060--Hb_001818_020 Hb_010810_020 Hb_010810_020 Hb_171900_050--Hb_010810_020 Hb_171900_050--Hb_000545_150 Hb_001584_070 Hb_001584_070 Hb_171900_050--Hb_001584_070 Hb_171900_050--Hb_000365_380 Hb_000317_340 Hb_000317_340 Hb_171900_050--Hb_000317_340 Hb_000580_080 Hb_000580_080 Hb_171900_050--Hb_000580_080 Hb_002716_090 Hb_002716_090 Hb_001247_350--Hb_002716_090 Hb_005496_030 Hb_005496_030 Hb_001247_350--Hb_005496_030 Hb_000526_040 Hb_000526_040 Hb_001247_350--Hb_000526_040 Hb_001247_350--Hb_000545_150 Hb_000948_190 Hb_000948_190 Hb_001247_350--Hb_000948_190 Hb_001247_350--Hb_032202_090 Hb_000417_110 Hb_000417_110 Hb_003058_070--Hb_000417_110 Hb_003001_060 Hb_003001_060 Hb_003058_070--Hb_003001_060 Hb_002234_210 Hb_002234_210 Hb_003058_070--Hb_002234_210 Hb_000190_060 Hb_000190_060 Hb_003058_070--Hb_000190_060 Hb_003058_070--Hb_000365_380 Hb_000798_030 Hb_000798_030 Hb_003058_070--Hb_000798_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
233.803 76.8712 136.323 130.303 345.646 507.719
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
400.241 818.804 141.963 69.8523 88.9009

CAGE analysis