Hb_009787_030

Information

Type -
Description -
Location Contig9787: 27494-33369
Sequence    

Annotation

kegg
ID rcu:RCOM_0843720
description Prolactin regulatory element-binding protein, putative (EC:1.3.1.74)
nr
ID XP_002526027.1
description Prolactin regulatory element-binding protein, putative [Ricinus communis]
swissprot
ID Q39221
description SEC12-like protein 2 OS=Arabidopsis thaliana GN=STL2P PE=1 SV=4
trembl
ID B9SJ58
description Prolactin regulatory element-binding protein, putative OS=Ricinus communis GN=RCOM_0843720 PE=4 SV=1
Gene Ontology
ID GO:0032440
description sec12-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64272: 27462-33229 , PASA_asmbl_64273: 28156-28299 , PASA_asmbl_64274: 27459-31206 , PASA_asmbl_64275: 27849-28089
cDNA
(Sanger)
(ID:Location)		 021_P05.ab1: 27459-31206 , 033_C12.ab1: 27459-29688 , 051_M01.ab1: 27494-27679

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009787_030 0.0 - - Prolactin regulatory element-binding protein, putative [Ricinus communis]
2 Hb_001427_160 0.0604666514 - - o-methyltransferase, putative [Ricinus communis]
3 Hb_001366_370 0.0695728073 - - PREDICTED: aarF domain-containing protein kinase 4 isoform X1 [Jatropha curcas]
4 Hb_011344_120 0.0757014788 - - PREDICTED: uncharacterized protein LOC105645969 [Jatropha curcas]
5 Hb_000141_080 0.0759146787 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial isoform X1 [Brassica rapa]
6 Hb_000115_150 0.081402197 - - PREDICTED: IST1 homolog [Jatropha curcas]
7 Hb_002053_140 0.0846874739 - - PREDICTED: coatomer subunit epsilon-1 [Jatropha curcas]
8 Hb_001189_070 0.085948832 - - PREDICTED: ribosome production factor 1 [Jatropha curcas]
9 Hb_000200_020 0.0884242796 - - PREDICTED: uncharacterized protein LOC105636907 [Jatropha curcas]
10 Hb_000159_090 0.0888024798 - - hypothetical protein POPTR_0015s153201g, partial [Populus trichocarpa]
11 Hb_000111_320 0.0892984978 transcription factor TF Family: bZIP Transcription factor HBP-1b(c1), putative [Ricinus communis]
12 Hb_000347_240 0.0895751309 - - PREDICTED: proteasome subunit alpha type-6 [Pyrus x bretschneideri]
13 Hb_002289_080 0.0902584923 - - hypothetical protein POPTR_0016s05590g [Populus trichocarpa]
14 Hb_001348_020 0.0921715031 - - PREDICTED: uncharacterized protein LOC105638926 isoform X2 [Jatropha curcas]
15 Hb_026198_070 0.0927877872 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
16 Hb_003633_050 0.0939402862 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
17 Hb_000994_120 0.0941626645 - - unknown [Populus trichocarpa]
18 Hb_086085_020 0.0947801593 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein isoform 3 [Theobroma cacao]
19 Hb_031862_100 0.095635433 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_003994_230 0.096353933 - - 7-dehydrocholesterol reductase, putative [Ricinus communis]

Gene co-expression network

sample Hb_009787_030 Hb_009787_030 Hb_001427_160 Hb_001427_160 Hb_009787_030--Hb_001427_160 Hb_001366_370 Hb_001366_370 Hb_009787_030--Hb_001366_370 Hb_011344_120 Hb_011344_120 Hb_009787_030--Hb_011344_120 Hb_000141_080 Hb_000141_080 Hb_009787_030--Hb_000141_080 Hb_000115_150 Hb_000115_150 Hb_009787_030--Hb_000115_150 Hb_002053_140 Hb_002053_140 Hb_009787_030--Hb_002053_140 Hb_001427_160--Hb_002053_140 Hb_000510_300 Hb_000510_300 Hb_001427_160--Hb_000510_300 Hb_003994_230 Hb_003994_230 Hb_001427_160--Hb_003994_230 Hb_001427_160--Hb_001366_370 Hb_001703_060 Hb_001703_060 Hb_001427_160--Hb_001703_060 Hb_000200_020 Hb_000200_020 Hb_001366_370--Hb_000200_020 Hb_001366_370--Hb_002053_140 Hb_000783_010 Hb_000783_010 Hb_001366_370--Hb_000783_010 Hb_001366_370--Hb_000510_300 Hb_007928_030 Hb_007928_030 Hb_011344_120--Hb_007928_030 Hb_005914_170 Hb_005914_170 Hb_011344_120--Hb_005914_170 Hb_001189_070 Hb_001189_070 Hb_011344_120--Hb_001189_070 Hb_004108_220 Hb_004108_220 Hb_011344_120--Hb_004108_220 Hb_000347_240 Hb_000347_240 Hb_011344_120--Hb_000347_240 Hb_000141_080--Hb_002053_140 Hb_030736_020 Hb_030736_020 Hb_000141_080--Hb_030736_020 Hb_000141_080--Hb_001366_370 Hb_000735_110 Hb_000735_110 Hb_000141_080--Hb_000735_110 Hb_000141_080--Hb_001427_160 Hb_000120_370 Hb_000120_370 Hb_000115_150--Hb_000120_370 Hb_003988_050 Hb_003988_050 Hb_000115_150--Hb_003988_050 Hb_062537_010 Hb_062537_010 Hb_000115_150--Hb_062537_010 Hb_001104_100 Hb_001104_100 Hb_000115_150--Hb_001104_100 Hb_005648_010 Hb_005648_010 Hb_000115_150--Hb_005648_010 Hb_000025_190 Hb_000025_190 Hb_000115_150--Hb_000025_190 Hb_002053_140--Hb_030736_020 Hb_003929_270 Hb_003929_270 Hb_002053_140--Hb_003929_270 Hb_012796_020 Hb_012796_020 Hb_002053_140--Hb_012796_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.5926 13.6909 19.6231 50.6123 25.0907 26.9834
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.0867 32.7375 25.1519 35.8183 23.8777

CAGE analysis