Hb_009787_040

Information

Type desease resistance
Description Gene Name: AAA_17
Location Contig9787: 33732-51376
Sequence    

Annotation

kegg
ID pop:POPTR_0008s12920g
description POPTRDRAFT_564619; hypothetical protein
nr
ID XP_011038638.1
description PREDICTED: uncharacterized protein LOC105135462 isoform X2 [Populus euphratica]
swissprot
ID Q54R62
description Uridine-cytidine kinase C OS=Dictyostelium discoideum GN=udkC PE=3 SV=1
trembl
ID A0A067L1T4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04702 PE=4 SV=1
Gene Ontology
ID GO:0004849
description uridine-cytidine kinase c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64276: 33911-37442 , PASA_asmbl_64277: 36745-36887 , PASA_asmbl_64278: 38333-43866 , PASA_asmbl_64279: 38333-43825 , PASA_asmbl_64281: 48153-49506 , PASA_asmbl_64282: 49579-51222
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009787_040 0.0 desease resistance Gene Name: AAA_17 PREDICTED: uncharacterized protein LOC105135462 isoform X2 [Populus euphratica]
2 Hb_000099_060 0.0843703254 - - hypothetical protein JCGZ_23948 [Jatropha curcas]
3 Hb_000970_010 0.1017145678 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
4 Hb_000563_240 0.107249676 - - PREDICTED: 60S ribosomal protein L19-3 [Jatropha curcas]
5 Hb_019253_030 0.1114697401 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-3-like [Citrus sinensis]
6 Hb_155764_020 0.1116233552 - - hypothetical protein B456_009G265500 [Gossypium raimondii]
7 Hb_005590_020 0.1124325302 - - hypothetical protein CICLE_v10010008mg [Citrus clementina]
8 Hb_002182_060 0.1132054412 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATXR6 [Jatropha curcas]
9 Hb_000134_330 0.1135260028 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
10 Hb_000025_530 0.1138245853 - - PREDICTED: reactive oxygen species modulator 1 [Jatropha curcas]
11 Hb_000815_270 0.1152467707 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003106_050 0.1187607448 transcription factor TF Family: Orphans hypothetical protein POPTR_0015s08130g [Populus trichocarpa]
13 Hb_001269_270 0.1193865714 - - 60S ribosomal protein L27B [Hevea brasiliensis]
14 Hb_002759_230 0.1201382756 - - PREDICTED: vacuolar protein sorting-associated protein 25 [Jatropha curcas]
15 Hb_000510_110 0.1205481448 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
16 Hb_002454_030 0.1206477736 - - PREDICTED: mitochondrial substrate carrier family protein B [Jatropha curcas]
17 Hb_001085_090 0.1212693514 - - PREDICTED: uncharacterized protein LOC105634186 [Jatropha curcas]
18 Hb_000144_110 0.1212753324 - - hypothetical protein CICLE_v10013189mg [Citrus clementina]
19 Hb_009252_130 0.1216908645 - - Deletion of SUV3 suppressor 1(I) isoform 1 [Theobroma cacao]
20 Hb_002053_060 0.1218487253 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_009787_040 Hb_009787_040 Hb_000099_060 Hb_000099_060 Hb_009787_040--Hb_000099_060 Hb_000970_010 Hb_000970_010 Hb_009787_040--Hb_000970_010 Hb_000563_240 Hb_000563_240 Hb_009787_040--Hb_000563_240 Hb_019253_030 Hb_019253_030 Hb_009787_040--Hb_019253_030 Hb_155764_020 Hb_155764_020 Hb_009787_040--Hb_155764_020 Hb_005590_020 Hb_005590_020 Hb_009787_040--Hb_005590_020 Hb_000134_330 Hb_000134_330 Hb_000099_060--Hb_000134_330 Hb_002182_060 Hb_002182_060 Hb_000099_060--Hb_002182_060 Hb_008173_090 Hb_008173_090 Hb_000099_060--Hb_008173_090 Hb_000099_060--Hb_155764_020 Hb_000099_060--Hb_000970_010 Hb_001269_270 Hb_001269_270 Hb_000099_060--Hb_001269_270 Hb_001818_020 Hb_001818_020 Hb_000970_010--Hb_001818_020 Hb_000970_010--Hb_008173_090 Hb_023732_070 Hb_023732_070 Hb_000970_010--Hb_023732_070 Hb_002518_050 Hb_002518_050 Hb_000970_010--Hb_002518_050 Hb_001584_070 Hb_001584_070 Hb_000970_010--Hb_001584_070 Hb_000545_150 Hb_000545_150 Hb_000970_010--Hb_000545_150 Hb_000563_240--Hb_155764_020 Hb_001248_080 Hb_001248_080 Hb_000563_240--Hb_001248_080 Hb_000563_240--Hb_000099_060 Hb_007575_070 Hb_007575_070 Hb_000563_240--Hb_007575_070 Hb_011311_010 Hb_011311_010 Hb_000563_240--Hb_011311_010 Hb_001268_140 Hb_001268_140 Hb_000563_240--Hb_001268_140 Hb_002259_070 Hb_002259_070 Hb_019253_030--Hb_002259_070 Hb_143766_050 Hb_143766_050 Hb_019253_030--Hb_143766_050 Hb_010261_060 Hb_010261_060 Hb_019253_030--Hb_010261_060 Hb_000574_160 Hb_000574_160 Hb_019253_030--Hb_000574_160 Hb_009686_030 Hb_009686_030 Hb_019253_030--Hb_009686_030 Hb_001540_010 Hb_001540_010 Hb_019253_030--Hb_001540_010 Hb_155764_020--Hb_001248_080 Hb_155764_020--Hb_001268_140 Hb_155764_020--Hb_000134_330 Hb_001300_270 Hb_001300_270 Hb_155764_020--Hb_001300_270 Hb_010672_070 Hb_010672_070 Hb_005590_020--Hb_010672_070 Hb_076626_010 Hb_076626_010 Hb_005590_020--Hb_076626_010 Hb_007944_040 Hb_007944_040 Hb_005590_020--Hb_007944_040 Hb_005590_020--Hb_001268_140 Hb_002999_050 Hb_002999_050 Hb_005590_020--Hb_002999_050 Hb_000212_260 Hb_000212_260 Hb_005590_020--Hb_000212_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.5433 5.5703 4.38938 5.17362 10.8848 11.2186
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.2096 53.2003 21.1578 6.54757 4.82101

CAGE analysis