Hb_009787_050

Information

Type -
Description -
Location Contig9787: 69289-74210
Sequence    

Annotation

kegg
ID rcu:RCOM_0843400
description (Di)nucleoside polyphosphate hydrolase, putative
nr
ID XP_002526025.1
description (Di)nucleoside polyphosphate hydrolase, putative [Ricinus communis]
swissprot
ID Q9C6Z2
description Nudix hydrolase 25 OS=Arabidopsis thaliana GN=NUDT25 PE=1 SV=1
trembl
ID B9SJ56
description (Di)nucleoside polyphosphate hydrolase, putative OS=Ricinus communis GN=RCOM_0843400 PE=3 SV=1
Gene Ontology
ID GO:0008893
description nudix hydrolase 25

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64283: 69290-74083 , PASA_asmbl_64285: 70595-71027 , PASA_asmbl_64286: 71422-71942
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009787_050 0.0 - - (Di)nucleoside polyphosphate hydrolase, putative [Ricinus communis]
2 Hb_003363_080 0.096394489 - - eukaryotic translation elongation factor 1B gamma-subunit [Hevea brasiliensis]
3 Hb_000962_030 0.0978815681 - - PREDICTED: metal tolerance protein C2 [Jatropha curcas]
4 Hb_001114_110 0.1022553876 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
5 Hb_005765_010 0.1077077558 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 isoform X1 [Jatropha curcas]
6 Hb_146081_010 0.1095919745 - - PREDICTED: protein SCAI [Jatropha curcas]
7 Hb_002307_280 0.1118024587 - - Endonuclease/exonuclease/phosphatase family protein isoform 3 [Theobroma cacao]
8 Hb_007062_030 0.1145214419 - - hypothetical protein VITISV_039033 [Vitis vinifera]
9 Hb_003912_070 0.114627528 - - PREDICTED: nuclear pore complex protein NUP85 [Jatropha curcas]
10 Hb_000182_040 0.1153357954 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 24 [Jatropha curcas]
11 Hb_006502_030 0.1162689172 - - PREDICTED: probable kinetochore protein ndc80 [Jatropha curcas]
12 Hb_011849_040 0.117317985 - - ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_000684_510 0.1196817783 - - run and tbc1 domain containing 3, plant, putative [Ricinus communis]
14 Hb_001860_030 0.1200355963 - - PREDICTED: cleavage stimulation factor subunit 77 isoform X5 [Jatropha curcas]
15 Hb_000261_240 0.1204529957 - - RecName: Full=Elongation factor 1-alpha; Short=EF-1-alpha [Manihot esculenta]
16 Hb_000836_550 0.1227739885 - - PREDICTED: reticulon-like protein B5 [Jatropha curcas]
17 Hb_001434_080 0.1230135752 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
18 Hb_000009_500 0.1230919248 - - PREDICTED: NASP-related protein sim3 [Jatropha curcas]
19 Hb_002056_090 0.1232544599 transcription factor TF Family: GNAT PREDICTED: probable acetyltransferase NATA1-like [Jatropha curcas]
20 Hb_011287_050 0.1236470782 - - PREDICTED: uncharacterized protein LOC105644786 [Jatropha curcas]

Gene co-expression network

sample Hb_009787_050 Hb_009787_050 Hb_003363_080 Hb_003363_080 Hb_009787_050--Hb_003363_080 Hb_000962_030 Hb_000962_030 Hb_009787_050--Hb_000962_030 Hb_001114_110 Hb_001114_110 Hb_009787_050--Hb_001114_110 Hb_005765_010 Hb_005765_010 Hb_009787_050--Hb_005765_010 Hb_146081_010 Hb_146081_010 Hb_009787_050--Hb_146081_010 Hb_002307_280 Hb_002307_280 Hb_009787_050--Hb_002307_280 Hb_007062_030 Hb_007062_030 Hb_003363_080--Hb_007062_030 Hb_000170_090 Hb_000170_090 Hb_003363_080--Hb_000170_090 Hb_003363_080--Hb_005765_010 Hb_001377_310 Hb_001377_310 Hb_003363_080--Hb_001377_310 Hb_003177_020 Hb_003177_020 Hb_003363_080--Hb_003177_020 Hb_000981_030 Hb_000981_030 Hb_003363_080--Hb_000981_030 Hb_002110_080 Hb_002110_080 Hb_000962_030--Hb_002110_080 Hb_000962_030--Hb_001114_110 Hb_001481_060 Hb_001481_060 Hb_000962_030--Hb_001481_060 Hb_007248_030 Hb_007248_030 Hb_000962_030--Hb_007248_030 Hb_004705_170 Hb_004705_170 Hb_000962_030--Hb_004705_170 Hb_001405_210 Hb_001405_210 Hb_000962_030--Hb_001405_210 Hb_015026_130 Hb_015026_130 Hb_001114_110--Hb_015026_130 Hb_021165_010 Hb_021165_010 Hb_001114_110--Hb_021165_010 Hb_031527_030 Hb_031527_030 Hb_001114_110--Hb_031527_030 Hb_016172_030 Hb_016172_030 Hb_001114_110--Hb_016172_030 Hb_001434_080 Hb_001434_080 Hb_001114_110--Hb_001434_080 Hb_005765_010--Hb_007062_030 Hb_000083_120 Hb_000083_120 Hb_005765_010--Hb_000083_120 Hb_105328_020 Hb_105328_020 Hb_005765_010--Hb_105328_020 Hb_001500_140 Hb_001500_140 Hb_005765_010--Hb_001500_140 Hb_005765_010--Hb_000981_030 Hb_000322_070 Hb_000322_070 Hb_146081_010--Hb_000322_070 Hb_162060_010 Hb_162060_010 Hb_146081_010--Hb_162060_010 Hb_030736_070 Hb_030736_070 Hb_146081_010--Hb_030736_070 Hb_146081_010--Hb_001114_110 Hb_000116_150 Hb_000116_150 Hb_146081_010--Hb_000116_150 Hb_145880_010 Hb_145880_010 Hb_146081_010--Hb_145880_010 Hb_001269_140 Hb_001269_140 Hb_002307_280--Hb_001269_140 Hb_001123_050 Hb_001123_050 Hb_002307_280--Hb_001123_050 Hb_002307_280--Hb_001434_080 Hb_001105_160 Hb_001105_160 Hb_002307_280--Hb_001105_160 Hb_017387_010 Hb_017387_010 Hb_002307_280--Hb_017387_010 Hb_001258_110 Hb_001258_110 Hb_002307_280--Hb_001258_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.6978 37.6356 29.0507 39.8764 18.9091 45.2015
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.7007 17.7367 20.1077 37.5277 13.9629

CAGE analysis