Hb_009793_010

Information

Type -
Description -
Location Contig9793: 1415-2671
Sequence    

Annotation

kegg
ID rcu:RCOM_0742410
description nucleic acid binding protein, putative (EC:3.1.2.15)
nr
ID KDP45615.1
description hypothetical protein JCGZ_17222 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LLH6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17222 PE=4 SV=1
Gene Ontology
ID GO:0003723
description far upstream element-binding protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 034_I04.ab1: 1897-2616

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009793_010 0.0 - - hypothetical protein JCGZ_17222 [Jatropha curcas]
2 Hb_000007_100 0.0633966636 - - PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
3 Hb_000926_300 0.0710618324 - - PREDICTED: small ubiquitin-related modifier 1 [Jatropha curcas]
4 Hb_001814_050 0.0711704026 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
5 Hb_000152_420 0.0731169674 - - hypothetical protein B456_001G174200, partial [Gossypium raimondii]
6 Hb_000707_030 0.073555241 - - PREDICTED: probable proteasome inhibitor [Vitis vinifera]
7 Hb_009554_010 0.0737367303 - - PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Jatropha curcas]
8 Hb_002713_070 0.0739064489 - - hypothetical protein POPTR_0002s21620g [Populus trichocarpa]
9 Hb_002043_130 0.074765111 - - PREDICTED: 60S ribosomal protein L28-2-like [Jatropha curcas]
10 Hb_000172_320 0.0749826416 - - PREDICTED: ribosome biogenesis protein TSR3 homolog [Jatropha curcas]
11 Hb_004032_010 0.077796294 - - PREDICTED: uncharacterized protein LOC105635123 [Jatropha curcas]
12 Hb_002284_240 0.0804174596 - - PREDICTED: coiled-coil domain-containing protein 115 isoform X3 [Jatropha curcas]
13 Hb_004375_100 0.0820247265 - - PREDICTED: 60S ribosomal protein L19-1 [Jatropha curcas]
14 Hb_001505_020 0.0835252376 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 9 [Jatropha curcas]
15 Hb_000917_110 0.0836287438 - - PREDICTED: nudix hydrolase 1 [Jatropha curcas]
16 Hb_006816_530 0.0851428227 - - 60S ribosomal protein L18, putative [Ricinus communis]
17 Hb_000307_090 0.0862065006 - - hypothetical protein CICLE_v10002475mg [Citrus clementina]
18 Hb_002226_070 0.0868214418 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
19 Hb_000380_190 0.0868403936 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
20 Hb_004157_030 0.0877902891 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]

Gene co-expression network

sample Hb_009793_010 Hb_009793_010 Hb_000007_100 Hb_000007_100 Hb_009793_010--Hb_000007_100 Hb_000926_300 Hb_000926_300 Hb_009793_010--Hb_000926_300 Hb_001814_050 Hb_001814_050 Hb_009793_010--Hb_001814_050 Hb_000152_420 Hb_000152_420 Hb_009793_010--Hb_000152_420 Hb_000707_030 Hb_000707_030 Hb_009793_010--Hb_000707_030 Hb_009554_010 Hb_009554_010 Hb_009793_010--Hb_009554_010 Hb_000007_100--Hb_000926_300 Hb_000926_250 Hb_000926_250 Hb_000007_100--Hb_000926_250 Hb_000380_190 Hb_000380_190 Hb_000007_100--Hb_000380_190 Hb_002284_240 Hb_002284_240 Hb_000007_100--Hb_002284_240 Hb_003599_040 Hb_003599_040 Hb_000007_100--Hb_003599_040 Hb_128048_010 Hb_128048_010 Hb_000926_300--Hb_128048_010 Hb_000926_300--Hb_003599_040 Hb_012573_070 Hb_012573_070 Hb_000926_300--Hb_012573_070 Hb_000926_300--Hb_002284_240 Hb_000307_090 Hb_000307_090 Hb_000926_300--Hb_000307_090 Hb_006816_530 Hb_006816_530 Hb_001814_050--Hb_006816_530 Hb_004375_100 Hb_004375_100 Hb_001814_050--Hb_004375_100 Hb_004157_030 Hb_004157_030 Hb_001814_050--Hb_004157_030 Hb_002043_130 Hb_002043_130 Hb_001814_050--Hb_002043_130 Hb_001505_020 Hb_001505_020 Hb_001814_050--Hb_001505_020 Hb_001369_640 Hb_001369_640 Hb_000152_420--Hb_001369_640 Hb_000792_130 Hb_000792_130 Hb_000152_420--Hb_000792_130 Hb_002289_120 Hb_002289_120 Hb_000152_420--Hb_002289_120 Hb_000152_420--Hb_004157_030 Hb_000172_320 Hb_000172_320 Hb_000152_420--Hb_000172_320 Hb_004032_100 Hb_004032_100 Hb_000707_030--Hb_004032_100 Hb_007735_030 Hb_007735_030 Hb_000707_030--Hb_007735_030 Hb_000331_450 Hb_000331_450 Hb_000707_030--Hb_000331_450 Hb_002296_040 Hb_002296_040 Hb_000707_030--Hb_002296_040 Hb_004032_010 Hb_004032_010 Hb_000707_030--Hb_004032_010 Hb_001638_260 Hb_001638_260 Hb_009554_010--Hb_001638_260 Hb_003226_210 Hb_003226_210 Hb_009554_010--Hb_003226_210 Hb_002713_070 Hb_002713_070 Hb_009554_010--Hb_002713_070 Hb_009554_010--Hb_006816_530 Hb_000086_550 Hb_000086_550 Hb_009554_010--Hb_000086_550
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.86341 2.37249 2.36574 4.49319 4.95476 6.1087
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.17868 13.1362 4.39189 4.33921 1.56635

CAGE analysis