Hb_009803_040

Information

Type -
Description -
Location Contig9803: 22927-26410
Sequence    

Annotation

kegg
ID pop:POPTR_0002s25650g
description POPTRDRAFT_553283; tetratricopeptide repeat-containing family protein
nr
ID XP_002303105.1
description tetratricopeptide repeat-containing family protein [Populus trichocarpa]
swissprot
ID Q54M20
description Tetratricopeptide repeat protein 4 homolog OS=Dictyostelium discoideum GN=ttc4 PE=3 SV=1
trembl
ID B9GRB6
description Tetratricopeptide repeat-containing family protein OS=Populus trichocarpa GN=POPTR_0002s25650g PE=4 SV=1
Gene Ontology
ID GO:0004721
description tetratricopeptide repeat protein 4 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64388: 25029-26241
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009803_040 0.0 - - tetratricopeptide repeat-containing family protein [Populus trichocarpa]
2 Hb_006634_040 0.1030090801 - - hypothetical protein VITISV_030841 [Vitis vinifera]
3 Hb_003025_020 0.1052617477 - - WD-repeat protein, putative [Ricinus communis]
4 Hb_001124_120 0.1089468501 - - PREDICTED: uncharacterized protein LOC105631831 isoform X1 [Jatropha curcas]
5 Hb_000076_270 0.1102502356 - - PREDICTED: DDRGK domain-containing protein 1 [Populus euphratica]
6 Hb_003788_050 0.1109069146 - - PREDICTED: interferon-induced guanylate-binding protein 2-like [Jatropha curcas]
7 Hb_000429_200 0.1119647862 - - PREDICTED: DNA-binding protein SMUBP-2 [Jatropha curcas]
8 Hb_004837_190 0.1124179925 - - PREDICTED: uncharacterized protein LOC105648286 [Jatropha curcas]
9 Hb_000358_250 0.1175034987 - - PREDICTED: cell division cycle protein 27 homolog B [Jatropha curcas]
10 Hb_002067_040 0.1207628232 - - dihydrodipicolinate reductase, putative [Ricinus communis]
11 Hb_002805_270 0.1232667337 - - PREDICTED: phytochromobilin:ferredoxin oxidoreductase, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_000933_150 0.1245346721 - - PREDICTED: mitotic checkpoint protein BUB3.3 isoform X1 [Jatropha curcas]
13 Hb_004030_050 0.1256684265 - - PREDICTED: uncharacterized protein LOC105646691 [Jatropha curcas]
14 Hb_001484_060 0.126448099 - - PREDICTED: uncharacterized protein LOC105641630 [Jatropha curcas]
15 Hb_000735_180 0.1284960371 - - PREDICTED: putative quinone-oxidoreductase homolog, chloroplastic [Jatropha curcas]
16 Hb_030928_040 0.1301684745 - - RNA-binding protein, putative [Ricinus communis]
17 Hb_008887_050 0.1308630172 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
18 Hb_000540_150 0.1309377151 - - PREDICTED: uncharacterized protein YKR070W [Jatropha curcas]
19 Hb_001341_120 0.1335178974 - - hypothetical protein B456_001G130300 [Gossypium raimondii]
20 Hb_001502_070 0.1340503103 - - X-linked inhibitor of apoptosis protein, xiap, putative [Ricinus communis]

Gene co-expression network

sample Hb_009803_040 Hb_009803_040 Hb_006634_040 Hb_006634_040 Hb_009803_040--Hb_006634_040 Hb_003025_020 Hb_003025_020 Hb_009803_040--Hb_003025_020 Hb_001124_120 Hb_001124_120 Hb_009803_040--Hb_001124_120 Hb_000076_270 Hb_000076_270 Hb_009803_040--Hb_000076_270 Hb_003788_050 Hb_003788_050 Hb_009803_040--Hb_003788_050 Hb_000429_200 Hb_000429_200 Hb_009803_040--Hb_000429_200 Hb_000933_150 Hb_000933_150 Hb_006634_040--Hb_000933_150 Hb_005656_210 Hb_005656_210 Hb_006634_040--Hb_005656_210 Hb_000661_160 Hb_000661_160 Hb_006634_040--Hb_000661_160 Hb_006634_040--Hb_003788_050 Hb_001484_060 Hb_001484_060 Hb_006634_040--Hb_001484_060 Hb_002081_130 Hb_002081_130 Hb_003025_020--Hb_002081_130 Hb_066182_010 Hb_066182_010 Hb_003025_020--Hb_066182_010 Hb_002067_040 Hb_002067_040 Hb_003025_020--Hb_002067_040 Hb_002149_020 Hb_002149_020 Hb_003025_020--Hb_002149_020 Hb_002043_190 Hb_002043_190 Hb_003025_020--Hb_002043_190 Hb_009838_090 Hb_009838_090 Hb_003025_020--Hb_009838_090 Hb_000085_060 Hb_000085_060 Hb_001124_120--Hb_000085_060 Hb_150360_030 Hb_150360_030 Hb_001124_120--Hb_150360_030 Hb_002349_040 Hb_002349_040 Hb_001124_120--Hb_002349_040 Hb_000699_130 Hb_000699_130 Hb_001124_120--Hb_000699_130 Hb_031939_010 Hb_031939_010 Hb_001124_120--Hb_031939_010 Hb_007218_080 Hb_007218_080 Hb_001124_120--Hb_007218_080 Hb_001341_120 Hb_001341_120 Hb_000076_270--Hb_001341_120 Hb_002273_130 Hb_002273_130 Hb_000076_270--Hb_002273_130 Hb_001300_070 Hb_001300_070 Hb_000076_270--Hb_001300_070 Hb_091384_010 Hb_091384_010 Hb_000076_270--Hb_091384_010 Hb_000913_050 Hb_000913_050 Hb_000076_270--Hb_000913_050 Hb_002272_180 Hb_002272_180 Hb_000076_270--Hb_002272_180 Hb_000358_250 Hb_000358_250 Hb_003788_050--Hb_000358_250 Hb_089032_020 Hb_089032_020 Hb_003788_050--Hb_089032_020 Hb_003788_050--Hb_003025_020 Hb_000640_230 Hb_000640_230 Hb_003788_050--Hb_000640_230 Hb_003788_050--Hb_000076_270 Hb_000522_090 Hb_000522_090 Hb_000429_200--Hb_000522_090 Hb_007044_080 Hb_007044_080 Hb_000429_200--Hb_007044_080 Hb_000429_200--Hb_000358_250 Hb_000116_180 Hb_000116_180 Hb_000429_200--Hb_000116_180 Hb_000803_300 Hb_000803_300 Hb_000429_200--Hb_000803_300 Hb_000179_020 Hb_000179_020 Hb_000429_200--Hb_000179_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.01939 1.92265 5.97066 3.75446 17.0616 9.182
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.3014 6.3082 3.40501 6.20654 3.42781

CAGE analysis