Hb_009803_050

Information

Type -
Description -
Location Contig9803: 28790-32798
Sequence    

Annotation

kegg
ID rcu:RCOM_0996210
description hypothetical protein
nr
ID XP_012085207.1
description PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K2F3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17608 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64390: 28892-32479
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009803_050 0.0 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
2 Hb_000603_080 0.0556557319 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33170 [Vitis vinifera]
3 Hb_020805_130 0.0696190031 - - protein phosphatase 2c, putative [Ricinus communis]
4 Hb_001959_190 0.0757610468 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
5 Hb_002878_020 0.0765853503 - - mitochondrial carrier protein, putative [Ricinus communis]
6 Hb_005162_060 0.0772911744 - - PREDICTED: putative septum site-determining protein minD homolog, chloroplastic [Jatropha curcas]
7 Hb_005488_200 0.0809838706 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]
8 Hb_000016_160 0.0810897854 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
9 Hb_079312_010 0.0832000923 - - conserved hypothetical protein [Ricinus communis]
10 Hb_012423_030 0.0836566507 - - PREDICTED: probable sodium/metabolite cotransporter BASS6, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_000373_130 0.0839878513 - - PREDICTED: protein FAM188A [Jatropha curcas]
12 Hb_000436_130 0.0841270616 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
13 Hb_001314_070 0.0841275924 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003053_020 0.0846461121 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
15 Hb_000327_060 0.0853077047 - - PREDICTED: uncharacterized protein LOC105635258 isoform X2 [Jatropha curcas]
16 Hb_158445_010 0.0856618829 - - PREDICTED: cysteine protease ATG4-like isoform X1 [Jatropha curcas]
17 Hb_012019_010 0.0857302076 - - PREDICTED: F-box/kelch-repeat protein SKIP30 [Jatropha curcas]
18 Hb_002620_020 0.0858478447 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
19 Hb_030565_030 0.0868541241 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like [Jatropha curcas]
20 Hb_002311_360 0.0888050077 - - PREDICTED: uncharacterized protein LOC105114273 [Populus euphratica]

Gene co-expression network

sample Hb_009803_050 Hb_009803_050 Hb_000603_080 Hb_000603_080 Hb_009803_050--Hb_000603_080 Hb_020805_130 Hb_020805_130 Hb_009803_050--Hb_020805_130 Hb_001959_190 Hb_001959_190 Hb_009803_050--Hb_001959_190 Hb_002878_020 Hb_002878_020 Hb_009803_050--Hb_002878_020 Hb_005162_060 Hb_005162_060 Hb_009803_050--Hb_005162_060 Hb_005488_200 Hb_005488_200 Hb_009803_050--Hb_005488_200 Hb_001314_070 Hb_001314_070 Hb_000603_080--Hb_001314_070 Hb_000603_080--Hb_005488_200 Hb_001504_330 Hb_001504_330 Hb_000603_080--Hb_001504_330 Hb_000982_080 Hb_000982_080 Hb_000603_080--Hb_000982_080 Hb_003994_260 Hb_003994_260 Hb_000603_080--Hb_003994_260 Hb_020805_130--Hb_001959_190 Hb_001507_040 Hb_001507_040 Hb_020805_130--Hb_001507_040 Hb_003053_020 Hb_003053_020 Hb_020805_130--Hb_003053_020 Hb_020805_130--Hb_000603_080 Hb_002027_040 Hb_002027_040 Hb_020805_130--Hb_002027_040 Hb_004607_030 Hb_004607_030 Hb_001959_190--Hb_004607_030 Hb_001014_030 Hb_001014_030 Hb_001959_190--Hb_001014_030 Hb_003371_090 Hb_003371_090 Hb_001959_190--Hb_003371_090 Hb_001959_190--Hb_001507_040 Hb_000250_060 Hb_000250_060 Hb_002878_020--Hb_000250_060 Hb_011214_020 Hb_011214_020 Hb_002878_020--Hb_011214_020 Hb_086639_030 Hb_086639_030 Hb_002878_020--Hb_086639_030 Hb_002878_020--Hb_001959_190 Hb_001633_210 Hb_001633_210 Hb_002878_020--Hb_001633_210 Hb_158445_010 Hb_158445_010 Hb_005162_060--Hb_158445_010 Hb_000327_060 Hb_000327_060 Hb_005162_060--Hb_000327_060 Hb_001514_120 Hb_001514_120 Hb_005162_060--Hb_001514_120 Hb_003038_240 Hb_003038_240 Hb_005162_060--Hb_003038_240 Hb_000424_200 Hb_000424_200 Hb_005162_060--Hb_000424_200 Hb_005488_200--Hb_000982_080 Hb_007416_060 Hb_007416_060 Hb_005488_200--Hb_007416_060 Hb_003376_250 Hb_003376_250 Hb_005488_200--Hb_003376_250 Hb_148113_010 Hb_148113_010 Hb_005488_200--Hb_148113_010 Hb_003697_040 Hb_003697_040 Hb_005488_200--Hb_003697_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.3797 14.727 8.32353 14.3538 8.52314 10.5646
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.1444 27.7628 28.8963 13.0401 18.1068

CAGE analysis