Hb_009805_010

Information

Type -
Description -
Location Contig9805: 4307-5400
Sequence    

Annotation

kegg
ID rcu:RCOM_0351480
description transcription factor, putative
nr
ID XP_002532630.1
description transcription factor, putative [Ricinus communis]
swissprot
ID O23659
description B3 domain-containing protein At2g33720 OS=Arabidopsis thaliana GN=At2g33720 PE=2 SV=1
trembl
ID B9T311
description Transcription factor, putative OS=Ricinus communis GN=RCOM_0351480 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009805_010 0.0 - - transcription factor, putative [Ricinus communis]
2 Hb_000184_180 0.143290047 - - putative C3HC4-type RING zinc finger protein [Hevea brasiliensis]
3 Hb_001631_080 0.151785635 - - PREDICTED: importin-5-like [Populus euphratica]
4 Hb_003540_230 0.1551199598 - - PREDICTED: sphingosine kinase 1 isoform X1 [Jatropha curcas]
5 Hb_012799_060 0.1557062176 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
6 Hb_006816_440 0.156297754 - - protein phosphatase 2c, putative [Ricinus communis]
7 Hb_124315_040 0.1571958177 - - hypothetical protein 19 [Hevea brasiliensis]
8 Hb_023214_010 0.1595921873 - - aberrant lateral root formation 1 family protein [Populus trichocarpa]
9 Hb_000580_170 0.163535716 - - PREDICTED: arginase 1, mitochondrial [Jatropha curcas]
10 Hb_010872_060 0.1637242936 transcription factor TF Family: MYB Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
11 Hb_149683_010 0.1697717524 rubber biosynthesis Gene Name: REF2 RecName: Full=Rubber elongation factor protein; Short=REF; AltName: Allergen=Hev b 1 [Hevea brasiliensis]
12 Hb_001741_080 0.1746120131 rubber biosynthesis Gene Name: REF8 small rubber particle protein [Hevea brasiliensis]
13 Hb_003756_010 0.1749988535 - - PREDICTED: uncharacterized protein LOC105642108 [Jatropha curcas]
14 Hb_000052_010 0.1751597557 - - hypothetical protein M569_08416, partial [Genlisea aurea]
15 Hb_002235_230 0.1764514661 - - latex abundant protein 1 [Hevea brasiliensis]
16 Hb_000005_030 0.1797531906 - - hypothetical protein POPTR_0009s00870g [Populus trichocarpa]
17 Hb_000444_030 0.1824383849 - - PREDICTED: expansin-A20 [Jatropha curcas]
18 Hb_002235_220 0.1839996038 - - PREDICTED: pectinesterase 31-like [Jatropha curcas]
19 Hb_005450_010 0.1841831354 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
20 Hb_048141_010 0.1852667851 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 2 [Jatropha curcas]

Gene co-expression network

sample Hb_009805_010 Hb_009805_010 Hb_000184_180 Hb_000184_180 Hb_009805_010--Hb_000184_180 Hb_001631_080 Hb_001631_080 Hb_009805_010--Hb_001631_080 Hb_003540_230 Hb_003540_230 Hb_009805_010--Hb_003540_230 Hb_012799_060 Hb_012799_060 Hb_009805_010--Hb_012799_060 Hb_006816_440 Hb_006816_440 Hb_009805_010--Hb_006816_440 Hb_124315_040 Hb_124315_040 Hb_009805_010--Hb_124315_040 Hb_000184_180--Hb_006816_440 Hb_000052_010 Hb_000052_010 Hb_000184_180--Hb_000052_010 Hb_000444_030 Hb_000444_030 Hb_000184_180--Hb_000444_030 Hb_001741_080 Hb_001741_080 Hb_000184_180--Hb_001741_080 Hb_115919_020 Hb_115919_020 Hb_000184_180--Hb_115919_020 Hb_007747_130 Hb_007747_130 Hb_000184_180--Hb_007747_130 Hb_048141_010 Hb_048141_010 Hb_001631_080--Hb_048141_010 Hb_001631_080--Hb_003540_230 Hb_005450_010 Hb_005450_010 Hb_001631_080--Hb_005450_010 Hb_010578_090 Hb_010578_090 Hb_001631_080--Hb_010578_090 Hb_001631_080--Hb_124315_040 Hb_001631_070 Hb_001631_070 Hb_001631_080--Hb_001631_070 Hb_002235_230 Hb_002235_230 Hb_003540_230--Hb_002235_230 Hb_029584_140 Hb_029584_140 Hb_003540_230--Hb_029584_140 Hb_000580_170 Hb_000580_170 Hb_003540_230--Hb_000580_170 Hb_005016_130 Hb_005016_130 Hb_003540_230--Hb_005016_130 Hb_003540_230--Hb_012799_060 Hb_003038_180 Hb_003038_180 Hb_003540_230--Hb_003038_180 Hb_012799_060--Hb_000580_170 Hb_000078_030 Hb_000078_030 Hb_012799_060--Hb_000078_030 Hb_012799_060--Hb_001741_080 Hb_030765_020 Hb_030765_020 Hb_012799_060--Hb_030765_020 Hb_012799_060--Hb_005016_130 Hb_149683_010 Hb_149683_010 Hb_006816_440--Hb_149683_010 Hb_006816_440--Hb_002235_230 Hb_006816_440--Hb_000444_030 Hb_006816_440--Hb_001741_080 Hb_006816_440--Hb_000052_010 Hb_012347_010 Hb_012347_010 Hb_124315_040--Hb_012347_010 Hb_000957_040 Hb_000957_040 Hb_124315_040--Hb_000957_040 Hb_124315_040--Hb_003540_230 Hb_010872_060 Hb_010872_060 Hb_124315_040--Hb_010872_060 Hb_005396_040 Hb_005396_040 Hb_124315_040--Hb_005396_040 Hb_124315_040--Hb_029584_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.197729 0 0 0.0300413 0.031739 0.106891
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.291196 0.171712 0.102975 0 0

CAGE analysis