Hb_009812_010

Information

Type -
Description -
Location Contig9812: 16083-17957
Sequence    

Annotation

kegg
ID pop:POPTR_0005s06530g
description POPTRDRAFT_650613; ABC transporter family protein
nr
ID AIU41646.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q9SIT6
description ABC transporter G family member 5 OS=Arabidopsis thaliana GN=ABCG5 PE=2 SV=1
trembl
ID A0A097P9S7
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCG5 PE=2 SV=1
Gene Ontology
ID GO:0016021
description abc transporter g family member 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64404: 16817-17336
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009812_010 0.0 - - ABC transporter family protein [Hevea brasiliensis]
2 Hb_010839_010 0.0802689827 - - receptor-kinase, putative [Ricinus communis]
3 Hb_005116_010 0.0853012192 transcription factor TF Family: bHLH PREDICTED: basic helix-loop-helix protein A [Jatropha curcas]
4 Hb_004586_110 0.0956838481 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
5 Hb_004128_090 0.0987226308 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 44 [Jatropha curcas]
6 Hb_004010_090 0.1083149978 - - ATP binding protein, putative [Ricinus communis]
7 Hb_010334_040 0.1112160829 - - PREDICTED: uncharacterized protein LOC105108579 [Populus euphratica]
8 Hb_009150_060 0.1117936144 - - PREDICTED: cytochrome P450 CYP749A22-like [Prunus mume]
9 Hb_000684_490 0.1152100144 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 44 [Jatropha curcas]
10 Hb_000457_130 0.1197478595 - - hypothetical protein AALP_AA3G009100 [Arabis alpina]
11 Hb_009486_100 0.1200916122 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_005010_040 0.1213932497 - - PREDICTED: uncharacterized protein LOC105630824 [Jatropha curcas]
13 Hb_006970_100 0.1242017585 - - UDP-glucosyltransferase, putative [Ricinus communis]
14 Hb_000844_090 0.1242344678 - - PREDICTED: cytochrome P450 82C4-like [Jatropha curcas]
15 Hb_000471_010 0.125620683 - - ATP binding protein, putative [Ricinus communis]
16 Hb_001597_110 0.1277462689 - - -
17 Hb_002475_030 0.1318759168 - - conserved hypothetical protein [Ricinus communis]
18 Hb_006916_020 0.1320060894 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
19 Hb_033622_020 0.1330808021 - - lipid binding protein, putative [Ricinus communis]
20 Hb_074892_010 0.1341484177 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_009812_010 Hb_009812_010 Hb_010839_010 Hb_010839_010 Hb_009812_010--Hb_010839_010 Hb_005116_010 Hb_005116_010 Hb_009812_010--Hb_005116_010 Hb_004586_110 Hb_004586_110 Hb_009812_010--Hb_004586_110 Hb_004128_090 Hb_004128_090 Hb_009812_010--Hb_004128_090 Hb_004010_090 Hb_004010_090 Hb_009812_010--Hb_004010_090 Hb_010334_040 Hb_010334_040 Hb_009812_010--Hb_010334_040 Hb_010839_010--Hb_004128_090 Hb_010839_010--Hb_004010_090 Hb_029576_080 Hb_029576_080 Hb_010839_010--Hb_029576_080 Hb_000011_120 Hb_000011_120 Hb_010839_010--Hb_000011_120 Hb_010839_010--Hb_005116_010 Hb_005116_010--Hb_010334_040 Hb_005010_040 Hb_005010_040 Hb_005116_010--Hb_005010_040 Hb_009627_040 Hb_009627_040 Hb_005116_010--Hb_009627_040 Hb_005211_090 Hb_005211_090 Hb_005116_010--Hb_005211_090 Hb_000471_010 Hb_000471_010 Hb_004586_110--Hb_000471_010 Hb_000684_490 Hb_000684_490 Hb_004586_110--Hb_000684_490 Hb_011861_020 Hb_011861_020 Hb_004586_110--Hb_011861_020 Hb_009150_060 Hb_009150_060 Hb_004586_110--Hb_009150_060 Hb_005168_030 Hb_005168_030 Hb_004586_110--Hb_005168_030 Hb_004128_090--Hb_004010_090 Hb_002475_030 Hb_002475_030 Hb_004128_090--Hb_002475_030 Hb_004128_090--Hb_009150_060 Hb_003085_080 Hb_003085_080 Hb_004128_090--Hb_003085_080 Hb_004010_090--Hb_002475_030 Hb_004010_090--Hb_009150_060 Hb_001514_070 Hb_001514_070 Hb_004010_090--Hb_001514_070 Hb_000005_350 Hb_000005_350 Hb_010334_040--Hb_000005_350 Hb_000025_740 Hb_000025_740 Hb_010334_040--Hb_000025_740 Hb_010334_040--Hb_000684_490 Hb_010334_040--Hb_000471_010 Hb_010334_040--Hb_005010_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 6.64878 9.15505 5.03344 0 0.0103381
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0242496 0 0 38.9505 11.7107

CAGE analysis