Hb_009812_020

Information

Type -
Description -
Location Contig9812: 21340-27409
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009812_020 0.0 - - -
2 Hb_000003_840 0.1429488113 - - multidrug/pheromone exporter protein [Hevea brasiliensis]
3 Hb_080477_050 0.14963433 - - hypothetical protein M569_16374 [Genlisea aurea]
4 Hb_001437_240 0.1569328226 - - -
5 Hb_163950_010 0.171986311 - - -
6 Hb_002936_050 0.1758225728 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR18 isoform X2 [Jatropha curcas]
7 Hb_002897_060 0.1809663405 - - PREDICTED: uncharacterized protein LOC105649233 [Jatropha curcas]
8 Hb_012366_020 0.1810095411 - - unnamed protein product [Vitis vinifera]
9 Hb_000934_030 0.1820433913 - - -
10 Hb_004882_020 0.1829375068 - - -
11 Hb_042729_010 0.1845798436 - - -
12 Hb_000749_250 0.1865937687 - - PREDICTED: lanC-like protein GCR2 [Jatropha curcas]
13 Hb_003906_100 0.188830794 - - hypothetical protein JCGZ_26174 [Jatropha curcas]
14 Hb_183612_100 0.1959061229 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 22 [Jatropha curcas]
15 Hb_143629_090 0.1959387243 - - PREDICTED: uncharacterized protein LOC105647358 [Jatropha curcas]
16 Hb_003943_030 0.1974485841 - - PREDICTED: pentatricopeptide repeat-containing protein At1g32415, mitochondrial [Jatropha curcas]
17 Hb_000419_040 0.1976280299 - - chorismate synthase [Hevea brasiliensis]
18 Hb_007336_040 0.2062249884 - - protein binding protein, putative [Ricinus communis]
19 Hb_000165_010 0.2067235684 - - hypothetical protein POPTR_0010s19120g [Populus trichocarpa]
20 Hb_000260_580 0.212353195 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_009812_020 Hb_009812_020 Hb_000003_840 Hb_000003_840 Hb_009812_020--Hb_000003_840 Hb_080477_050 Hb_080477_050 Hb_009812_020--Hb_080477_050 Hb_001437_240 Hb_001437_240 Hb_009812_020--Hb_001437_240 Hb_163950_010 Hb_163950_010 Hb_009812_020--Hb_163950_010 Hb_002936_050 Hb_002936_050 Hb_009812_020--Hb_002936_050 Hb_002897_060 Hb_002897_060 Hb_009812_020--Hb_002897_060 Hb_000003_840--Hb_002936_050 Hb_042729_010 Hb_042729_010 Hb_000003_840--Hb_042729_010 Hb_002685_090 Hb_002685_090 Hb_000003_840--Hb_002685_090 Hb_143629_090 Hb_143629_090 Hb_000003_840--Hb_143629_090 Hb_000003_840--Hb_080477_050 Hb_012725_110 Hb_012725_110 Hb_000003_840--Hb_012725_110 Hb_000419_040 Hb_000419_040 Hb_080477_050--Hb_000419_040 Hb_080477_050--Hb_002936_050 Hb_080477_050--Hb_002897_060 Hb_012573_030 Hb_012573_030 Hb_080477_050--Hb_012573_030 Hb_054865_130 Hb_054865_130 Hb_080477_050--Hb_054865_130 Hb_004882_020 Hb_004882_020 Hb_001437_240--Hb_004882_020 Hb_183612_100 Hb_183612_100 Hb_001437_240--Hb_183612_100 Hb_001437_240--Hb_143629_090 Hb_002307_090 Hb_002307_090 Hb_001437_240--Hb_002307_090 Hb_001437_240--Hb_002936_050 Hb_004800_160 Hb_004800_160 Hb_001437_240--Hb_004800_160 Hb_000749_250 Hb_000749_250 Hb_163950_010--Hb_000749_250 Hb_163950_010--Hb_001437_240 Hb_163950_010--Hb_143629_090 Hb_000193_250 Hb_000193_250 Hb_163950_010--Hb_000193_250 Hb_163950_010--Hb_004882_020 Hb_002936_050--Hb_042729_010 Hb_002936_050--Hb_000419_040 Hb_012522_030 Hb_012522_030 Hb_002936_050--Hb_012522_030 Hb_001278_050 Hb_001278_050 Hb_002936_050--Hb_001278_050 Hb_002936_050--Hb_002897_060 Hb_002392_040 Hb_002392_040 Hb_002897_060--Hb_002392_040 Hb_002897_060--Hb_004882_020 Hb_000983_100 Hb_000983_100 Hb_002897_060--Hb_000983_100 Hb_003943_030 Hb_003943_030 Hb_002897_060--Hb_003943_030 Hb_003151_050 Hb_003151_050 Hb_002897_060--Hb_003151_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.513354 0.233264 0 0.0202827 0.361982 0.0658012
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.823526 0.415377 1.07293 0.145344 0.0351738

CAGE analysis