Hb_009813_040

Information

Type -
Description -
Location Contig9813: 59310-64884
Sequence    

Annotation

kegg
ID pper:PRUPE_ppb019121mg
description hypothetical protein
nr
ID XP_012453364.1
description PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
swissprot
ID Q9UR07
description Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-11 PE=3 SV=1
trembl
ID M5XLP5
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb019121mg PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009813_040 0.0 - - PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
2 Hb_099586_010 0.0012672838 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
3 Hb_000001_030 0.0037873332 - - polyprotein [Citrus endogenous pararetrovirus]
4 Hb_002656_040 0.0040144897 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
5 Hb_084299_010 0.004257449 - - PREDICTED: uncharacterized protein LOC104233139 [Nicotiana sylvestris]
6 Hb_008269_020 0.004851656 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_000118_050 0.0049191437 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
8 Hb_065059_010 0.0051771361 - - PREDICTED: uncharacterized protein LOC104907634 [Beta vulgaris subsp. vulgaris]
9 Hb_002982_060 0.0063857273 - - hypothetical protein JCGZ_19604 [Jatropha curcas]
10 Hb_068578_010 0.0104347646 - - PREDICTED: uncharacterized protein LOC105789577 [Gossypium raimondii]
11 Hb_001629_070 0.0106940307 transcription factor TF Family: ULT Protein ULTRAPETALA2, putative [Ricinus communis]
12 Hb_072825_010 0.0119806606 - - Uncharacterized protein TCM_023328 [Theobroma cacao]
13 Hb_000283_160 0.0154442453 - - hypothetical protein JCGZ_23510 [Jatropha curcas]
14 Hb_031104_010 0.0186481018 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
15 Hb_189099_010 0.0196608882 - - PREDICTED: uncharacterized protein At1g04910-like [Citrus sinensis]
16 Hb_048482_010 0.0211954129 - - -
17 Hb_104984_010 0.0258959235 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
18 Hb_000206_260 0.0267840606 - - cysteine protease, putative [Ricinus communis]
19 Hb_000482_100 0.0268530005 - - -
20 Hb_041626_010 0.0295972166 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]

Gene co-expression network

sample Hb_009813_040 Hb_009813_040 Hb_099586_010 Hb_099586_010 Hb_009813_040--Hb_099586_010 Hb_000001_030 Hb_000001_030 Hb_009813_040--Hb_000001_030 Hb_002656_040 Hb_002656_040 Hb_009813_040--Hb_002656_040 Hb_084299_010 Hb_084299_010 Hb_009813_040--Hb_084299_010 Hb_008269_020 Hb_008269_020 Hb_009813_040--Hb_008269_020 Hb_000118_050 Hb_000118_050 Hb_009813_040--Hb_000118_050 Hb_099586_010--Hb_000001_030 Hb_099586_010--Hb_002656_040 Hb_099586_010--Hb_084299_010 Hb_099586_010--Hb_008269_020 Hb_099586_010--Hb_000118_050 Hb_000001_030--Hb_002656_040 Hb_000001_030--Hb_084299_010 Hb_000001_030--Hb_008269_020 Hb_000001_030--Hb_000118_050 Hb_065059_010 Hb_065059_010 Hb_000001_030--Hb_065059_010 Hb_002656_040--Hb_084299_010 Hb_002656_040--Hb_008269_020 Hb_002656_040--Hb_000118_050 Hb_002656_040--Hb_065059_010 Hb_084299_010--Hb_008269_020 Hb_084299_010--Hb_000118_050 Hb_084299_010--Hb_065059_010 Hb_008269_020--Hb_000118_050 Hb_008269_020--Hb_065059_010 Hb_000118_050--Hb_065059_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0139018 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0523275

CAGE analysis