Hb_009838_020

Information

Type -
Description -
Location Contig9838: 7202-8865
Sequence    

Annotation

kegg
ID gmx:100775289
description cysteine-rich repeat secretory protein 3-like
nr
ID XP_012077599.1
description PREDICTED: cysteine-rich repeat secretory protein 3 [Jatropha curcas]
swissprot
ID Q6NM73
description Cysteine-rich repeat secretory protein 3 OS=Arabidopsis thaliana GN=CRRSP3 PE=1 SV=1
trembl
ID A0A067KM14
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12864 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64511: 6974-8998
cDNA
(Sanger)
(ID:Location)		 019_N03.ab1: 6974-7747 , 024_C04.ab1: 6975-7677 , 026_F24.ab1: 6974-7764

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009838_020 0.0 - - PREDICTED: cysteine-rich repeat secretory protein 3 [Jatropha curcas]
2 Hb_004899_340 0.1304492328 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
3 Hb_005941_030 0.1308459557 transcription factor TF Family: HB DNA binding protein, putative [Ricinus communis]
4 Hb_003029_060 0.1349470196 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
5 Hb_001221_190 0.1467618964 - - PREDICTED: F-box protein At5g50450 [Jatropha curcas]
6 Hb_000071_160 0.1487554749 - - PREDICTED: protein IQ-DOMAIN 14 [Jatropha curcas]
7 Hb_000977_290 0.1547795929 - - PREDICTED: CMP-sialic acid transporter 2-like isoform X2 [Jatropha curcas]
8 Hb_007192_020 0.1551675832 - - PREDICTED: high-affinity nitrate transporter 3.1-like [Jatropha curcas]
9 Hb_001711_080 0.1584101148 transcription factor TF Family: C2C2-LSD PREDICTED: protein LSD1 isoform X1 [Phoenix dactylifera]
10 Hb_011021_010 0.1626361828 - - kinase, putative [Ricinus communis]
11 Hb_014497_040 0.1764075158 - - PREDICTED: calvin cycle protein CP12-3, chloroplastic [Jatropha curcas]
12 Hb_014361_090 0.1775162384 - - acyl-CoA binding protein 3A [Vernicia fordii]
13 Hb_000347_190 0.1789294953 - - PREDICTED: transmembrane protein 87A [Jatropha curcas]
14 Hb_010984_020 0.1843329302 - - Translation factor GUF1 like, chloroplastic [Glycine soja]
15 Hb_000959_300 0.1865480414 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
16 Hb_003929_190 0.1880580853 - - PREDICTED: probable receptor-like protein kinase At5g18500 [Jatropha curcas]
17 Hb_000167_040 0.1925004561 - - PREDICTED: serine carboxypeptidase-like [Jatropha curcas]
18 Hb_000562_100 0.1933757734 - - PREDICTED: protein IQ-DOMAIN 32 [Jatropha curcas]
19 Hb_001969_140 0.1934071406 - - PREDICTED: uncharacterized protein LOC105634929 [Jatropha curcas]
20 Hb_022149_020 0.1935146016 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_009838_020 Hb_009838_020 Hb_004899_340 Hb_004899_340 Hb_009838_020--Hb_004899_340 Hb_005941_030 Hb_005941_030 Hb_009838_020--Hb_005941_030 Hb_003029_060 Hb_003029_060 Hb_009838_020--Hb_003029_060 Hb_001221_190 Hb_001221_190 Hb_009838_020--Hb_001221_190 Hb_000071_160 Hb_000071_160 Hb_009838_020--Hb_000071_160 Hb_000977_290 Hb_000977_290 Hb_009838_020--Hb_000977_290 Hb_011021_010 Hb_011021_010 Hb_004899_340--Hb_011021_010 Hb_001969_140 Hb_001969_140 Hb_004899_340--Hb_001969_140 Hb_001623_080 Hb_001623_080 Hb_004899_340--Hb_001623_080 Hb_000959_300 Hb_000959_300 Hb_004899_340--Hb_000959_300 Hb_014361_090 Hb_014361_090 Hb_004899_340--Hb_014361_090 Hb_005941_030--Hb_000071_160 Hb_014497_040 Hb_014497_040 Hb_005941_030--Hb_014497_040 Hb_011828_010 Hb_011828_010 Hb_005941_030--Hb_011828_010 Hb_005941_030--Hb_003029_060 Hb_005941_030--Hb_014361_090 Hb_003929_190 Hb_003929_190 Hb_003029_060--Hb_003929_190 Hb_003029_060--Hb_014497_040 Hb_003029_060--Hb_000071_160 Hb_003029_060--Hb_000977_290 Hb_001221_190--Hb_004899_340 Hb_001711_080 Hb_001711_080 Hb_001221_190--Hb_001711_080 Hb_004545_180 Hb_004545_180 Hb_001221_190--Hb_004545_180 Hb_001221_200 Hb_001221_200 Hb_001221_190--Hb_001221_200 Hb_000023_270 Hb_000023_270 Hb_001221_190--Hb_000023_270 Hb_000071_160--Hb_014361_090 Hb_000071_160--Hb_011828_010 Hb_000271_220 Hb_000271_220 Hb_000071_160--Hb_000271_220 Hb_000071_160--Hb_004899_340 Hb_000071_160--Hb_003929_190 Hb_010984_020 Hb_010984_020 Hb_000977_290--Hb_010984_020 Hb_000977_290--Hb_000959_300 Hb_007192_020 Hb_007192_020 Hb_000977_290--Hb_007192_020 Hb_002488_010 Hb_002488_010 Hb_000977_290--Hb_002488_010 Hb_004710_020 Hb_004710_020 Hb_000977_290--Hb_004710_020 Hb_001140_180 Hb_001140_180 Hb_000977_290--Hb_001140_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.15135 1.5389 4.24153 11.4768 1.73741 4.49091
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0885581 0.0696573 0.193614 2.41713 7.24911

CAGE analysis