Hb_009838_040

Information

Type -
Description -
Location Contig9838: 14096-14407
Sequence    

Annotation

kegg
ID rcu:RCOM_1217420
description hypothetical protein
nr
ID KDP33317.1
description hypothetical protein JCGZ_12866 [Jatropha curcas]
swissprot
ID Q9FNC9
description Mitochondrial import receptor subunit TOM9-2 OS=Arabidopsis thaliana GN=TOM9-2 PE=1 SV=3
trembl
ID A0A067KB20
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12866 PE=4 SV=1
Gene Ontology
ID GO:0005742
description mitochondrial import receptor subunit tom9-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64514: 15302-16250
cDNA
(Sanger)
(ID:Location)		 003_D20.ab1: 13937-14435

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009838_040 0.0 - - hypothetical protein JCGZ_12866 [Jatropha curcas]
2 Hb_000215_180 0.1061401842 - - hypothetical protein 17 [Hevea brasiliensis]
3 Hb_012239_100 0.1171311428 - - hypothetical protein VITISV_043897 [Vitis vinifera]
4 Hb_005000_160 0.1179754529 - - PREDICTED: uncharacterized protein LOC105637882 [Jatropha curcas]
5 Hb_000788_080 0.1232649062 - - PREDICTED: uncharacterized protein LOC105629703 isoform X1 [Jatropha curcas]
6 Hb_001258_140 0.1287178194 - - -
7 Hb_000106_100 0.1340551013 - - -
8 Hb_003211_050 0.1356523252 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
9 Hb_012395_210 0.1380655507 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001276_060 0.1388811911 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
11 Hb_003095_070 0.1406708945 - - hypothetical protein POPTR_0009s11230g [Populus trichocarpa]
12 Hb_072912_020 0.1425293095 - - abhydrolase domain containing, putative [Ricinus communis]
13 Hb_001507_070 0.1436378567 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001102_250 0.1460791591 - - PREDICTED: E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X1 [Jatropha curcas]
15 Hb_000896_120 0.1503198401 - - PREDICTED: acyl-protein thioesterase 2-like [Populus euphratica]
16 Hb_001213_120 0.1509082871 - - PREDICTED: immediate early response 3-interacting protein 1-like [Brassica rapa]
17 Hb_152021_010 0.1519621972 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
18 Hb_000613_160 0.1538769609 - - coated vesicle membrane protein, putative [Ricinus communis]
19 Hb_000318_490 0.1544988308 - - PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Jatropha curcas]
20 Hb_000103_550 0.1581946057 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_009838_040 Hb_009838_040 Hb_000215_180 Hb_000215_180 Hb_009838_040--Hb_000215_180 Hb_012239_100 Hb_012239_100 Hb_009838_040--Hb_012239_100 Hb_005000_160 Hb_005000_160 Hb_009838_040--Hb_005000_160 Hb_000788_080 Hb_000788_080 Hb_009838_040--Hb_000788_080 Hb_001258_140 Hb_001258_140 Hb_009838_040--Hb_001258_140 Hb_000106_100 Hb_000106_100 Hb_009838_040--Hb_000106_100 Hb_183086_040 Hb_183086_040 Hb_000215_180--Hb_183086_040 Hb_000922_100 Hb_000922_100 Hb_000215_180--Hb_000922_100 Hb_000780_210 Hb_000780_210 Hb_000215_180--Hb_000780_210 Hb_001377_380 Hb_001377_380 Hb_000215_180--Hb_001377_380 Hb_000896_120 Hb_000896_120 Hb_000215_180--Hb_000896_120 Hb_000215_180--Hb_000106_100 Hb_012239_100--Hb_000215_180 Hb_012239_100--Hb_005000_160 Hb_001579_140 Hb_001579_140 Hb_012239_100--Hb_001579_140 Hb_000432_050 Hb_000432_050 Hb_012239_100--Hb_000432_050 Hb_001538_140 Hb_001538_140 Hb_012239_100--Hb_001538_140 Hb_003371_100 Hb_003371_100 Hb_005000_160--Hb_003371_100 Hb_001276_060 Hb_001276_060 Hb_005000_160--Hb_001276_060 Hb_005000_160--Hb_000788_080 Hb_011671_400 Hb_011671_400 Hb_005000_160--Hb_011671_400 Hb_000613_160 Hb_000613_160 Hb_005000_160--Hb_000613_160 Hb_003095_070 Hb_003095_070 Hb_000788_080--Hb_003095_070 Hb_001511_140 Hb_001511_140 Hb_000788_080--Hb_001511_140 Hb_000788_080--Hb_000613_160 Hb_001159_200 Hb_001159_200 Hb_000788_080--Hb_001159_200 Hb_143766_100 Hb_143766_100 Hb_001258_140--Hb_143766_100 Hb_001258_140--Hb_000788_080 Hb_001258_140--Hb_003095_070 Hb_012395_210 Hb_012395_210 Hb_001258_140--Hb_012395_210 Hb_001258_140--Hb_001276_060 Hb_003349_070 Hb_003349_070 Hb_000106_100--Hb_003349_070 Hb_004223_260 Hb_004223_260 Hb_000106_100--Hb_004223_260 Hb_000106_100--Hb_000780_210 Hb_001623_430 Hb_001623_430 Hb_000106_100--Hb_001623_430 Hb_000106_100--Hb_183086_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.3484 4.59297 1.36184 14.5248 14.5041 19.5262
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
180.748 201.887 164.083 42.0135 1.26621

CAGE analysis