Hb_009838_080

Information

Type -
Description -
Location Contig9838: 26861-33583
Sequence    

Annotation

kegg
ID rcu:RCOM_1217360
description Ras-GTPase-activating protein-binding protein, putative
nr
ID XP_002528349.1
description Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
swissprot
ID O94260
description Putative G3BP-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nxt3 PE=1 SV=1
trembl
ID B9SQT0
description Ras-GTPase-activating protein-binding protein, putative OS=Ricinus communis GN=RCOM_1217360 PE=4 SV=1
Gene Ontology
ID GO:0005622
description g3bp-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64520: 27306-33475
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009838_080 0.0 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
2 Hb_002214_040 0.0601319982 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
3 Hb_000107_620 0.0608510551 - - PREDICTED: transcription initiation factor TFIID subunit 15 [Jatropha curcas]
4 Hb_004254_120 0.0613778157 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002477_070 0.0631564718 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
6 Hb_002609_020 0.0662797337 - - PREDICTED: phosphatidylinositol N-acetylglucosaminyltransferase subunit P-like [Jatropha curcas]
7 Hb_153112_020 0.0665090943 - - PREDICTED: mediator of RNA polymerase II transcription subunit 22b-like [Jatropha curcas]
8 Hb_000206_210 0.0670783162 - - PREDICTED: G patch domain-containing protein 11 [Jatropha curcas]
9 Hb_002205_070 0.0679214009 - - PREDICTED: tRNA (guanine(26)-N(2))-dimethyltransferase isoform X1 [Jatropha curcas]
10 Hb_024185_020 0.0695551876 - - -
11 Hb_012725_050 0.0700205393 transcription factor TF Family: SET set domain protein, putative [Ricinus communis]
12 Hb_002183_090 0.0711028684 - - PREDICTED: protein EMSY-LIKE 1 [Jatropha curcas]
13 Hb_006541_030 0.0720905278 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
14 Hb_118707_030 0.0725597708 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Beta vulgaris subsp. vulgaris]
15 Hb_032202_190 0.0732603452 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 21 [Gossypium raimondii]
16 Hb_001821_010 0.0737088301 - - PREDICTED: uncharacterized protein C9orf78 [Jatropha curcas]
17 Hb_000529_190 0.0748265175 - - PREDICTED: magnesium-dependent phosphatase 1-like [Jatropha curcas]
18 Hb_000777_040 0.0758330324 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
19 Hb_001703_030 0.0763362182 transcription factor TF Family: SET Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative [Ricinus communis]
20 Hb_006400_030 0.0766380579 - - hypothetical protein OsI_01237 [Oryza sativa Indica Group]

Gene co-expression network

sample Hb_009838_080 Hb_009838_080 Hb_002214_040 Hb_002214_040 Hb_009838_080--Hb_002214_040 Hb_000107_620 Hb_000107_620 Hb_009838_080--Hb_000107_620 Hb_004254_120 Hb_004254_120 Hb_009838_080--Hb_004254_120 Hb_002477_070 Hb_002477_070 Hb_009838_080--Hb_002477_070 Hb_002609_020 Hb_002609_020 Hb_009838_080--Hb_002609_020 Hb_153112_020 Hb_153112_020 Hb_009838_080--Hb_153112_020 Hb_000529_190 Hb_000529_190 Hb_002214_040--Hb_000529_190 Hb_000832_140 Hb_000832_140 Hb_002214_040--Hb_000832_140 Hb_118707_030 Hb_118707_030 Hb_002214_040--Hb_118707_030 Hb_002214_040--Hb_002477_070 Hb_000815_040 Hb_000815_040 Hb_002214_040--Hb_000815_040 Hb_002205_070 Hb_002205_070 Hb_000107_620--Hb_002205_070 Hb_000107_620--Hb_118707_030 Hb_006400_030 Hb_006400_030 Hb_000107_620--Hb_006400_030 Hb_011571_010 Hb_011571_010 Hb_000107_620--Hb_011571_010 Hb_002942_190 Hb_002942_190 Hb_000107_620--Hb_002942_190 Hb_032202_190 Hb_032202_190 Hb_004254_120--Hb_032202_190 Hb_005618_170 Hb_005618_170 Hb_004254_120--Hb_005618_170 Hb_005305_080 Hb_005305_080 Hb_004254_120--Hb_005305_080 Hb_000206_210 Hb_000206_210 Hb_004254_120--Hb_000206_210 Hb_000876_070 Hb_000876_070 Hb_004254_120--Hb_000876_070 Hb_000928_210 Hb_000928_210 Hb_004254_120--Hb_000928_210 Hb_002006_020 Hb_002006_020 Hb_002477_070--Hb_002006_020 Hb_002477_070--Hb_000529_190 Hb_008648_010 Hb_008648_010 Hb_002477_070--Hb_008648_010 Hb_000059_370 Hb_000059_370 Hb_002477_070--Hb_000059_370 Hb_004735_040 Hb_004735_040 Hb_002609_020--Hb_004735_040 Hb_001821_010 Hb_001821_010 Hb_002609_020--Hb_001821_010 Hb_000056_200 Hb_000056_200 Hb_002609_020--Hb_000056_200 Hb_000243_030 Hb_000243_030 Hb_002609_020--Hb_000243_030 Hb_002226_070 Hb_002226_070 Hb_002609_020--Hb_002226_070 Hb_000331_080 Hb_000331_080 Hb_153112_020--Hb_000331_080 Hb_000840_030 Hb_000840_030 Hb_153112_020--Hb_000840_030 Hb_004994_100 Hb_004994_100 Hb_153112_020--Hb_004994_100 Hb_011224_110 Hb_011224_110 Hb_153112_020--Hb_011224_110 Hb_003207_190 Hb_003207_190 Hb_153112_020--Hb_003207_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.3839 8.74039 13.2132 10.0987 24.2099 27.6488
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.1786 35.361 32.5193 15.6385 16.8789

CAGE analysis