Hb_009838_090

Information

Type -
Description -
Location Contig9838: 33838-36095
Sequence    

Annotation

kegg
ID rcu:RCOM_1217350
description o-linked n-acetylglucosamine transferase, ogt, putative
nr
ID XP_012077607.1
description PREDICTED: uncharacterized protein LOC105638421 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KEB3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12872 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64522: 34581-35225 , PASA_asmbl_64523: 36715-36932
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009838_090 0.0 - - PREDICTED: uncharacterized protein LOC105638421 isoform X2 [Jatropha curcas]
2 Hb_033843_010 0.0804887165 - - PREDICTED: cell division control protein 2 homolog A isoform X1 [Jatropha curcas]
3 Hb_005503_030 0.0808032296 - - PREDICTED: protein SCO1 homolog 1, mitochondrial [Jatropha curcas]
4 Hb_066182_010 0.0832682855 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
5 Hb_143629_010 0.0887416681 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
6 Hb_000327_120 0.0901716634 - - FGFR1 oncogene partner, putative [Ricinus communis]
7 Hb_002685_140 0.0913564973 - - PREDICTED: membrin-11 [Jatropha curcas]
8 Hb_008887_050 0.0913649806 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
9 Hb_001006_170 0.0933086202 - - Endonuclease V, putative [Ricinus communis]
10 Hb_000699_130 0.0935773085 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000061_370 0.0939494292 - - PREDICTED: zinc finger RNA-binding protein [Vitis vinifera]
12 Hb_015746_010 0.0941604245 - - PREDICTED: triacylglycerol lipase 2-like [Jatropha curcas]
13 Hb_002784_050 0.0941821471 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Jatropha curcas]
14 Hb_003025_020 0.0946171435 - - WD-repeat protein, putative [Ricinus communis]
15 Hb_031939_010 0.0952748089 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
16 Hb_003656_130 0.0964024768 - - PREDICTED: protein bem46 isoform X2 [Jatropha curcas]
17 Hb_001124_120 0.0968896592 - - PREDICTED: uncharacterized protein LOC105631831 isoform X1 [Jatropha curcas]
18 Hb_054865_100 0.0970415894 - - PREDICTED: probable protein S-acyltransferase 12 isoform X1 [Jatropha curcas]
19 Hb_002233_150 0.097296297 - - PREDICTED: uncharacterized protein LOC105633093 [Jatropha curcas]
20 Hb_002149_020 0.0977109114 - - PREDICTED: uncharacterized protein LOC105647982 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_009838_090 Hb_009838_090 Hb_033843_010 Hb_033843_010 Hb_009838_090--Hb_033843_010 Hb_005503_030 Hb_005503_030 Hb_009838_090--Hb_005503_030 Hb_066182_010 Hb_066182_010 Hb_009838_090--Hb_066182_010 Hb_143629_010 Hb_143629_010 Hb_009838_090--Hb_143629_010 Hb_000327_120 Hb_000327_120 Hb_009838_090--Hb_000327_120 Hb_002685_140 Hb_002685_140 Hb_009838_090--Hb_002685_140 Hb_000465_430 Hb_000465_430 Hb_033843_010--Hb_000465_430 Hb_003502_080 Hb_003502_080 Hb_033843_010--Hb_003502_080 Hb_003058_130 Hb_003058_130 Hb_033843_010--Hb_003058_130 Hb_001006_170 Hb_001006_170 Hb_033843_010--Hb_001006_170 Hb_033153_050 Hb_033153_050 Hb_033843_010--Hb_033153_050 Hb_003392_040 Hb_003392_040 Hb_033843_010--Hb_003392_040 Hb_005503_030--Hb_143629_010 Hb_007576_040 Hb_007576_040 Hb_005503_030--Hb_007576_040 Hb_005503_030--Hb_001006_170 Hb_008887_050 Hb_008887_050 Hb_005503_030--Hb_008887_050 Hb_031527_100 Hb_031527_100 Hb_005503_030--Hb_031527_100 Hb_000666_110 Hb_000666_110 Hb_005503_030--Hb_000666_110 Hb_054865_100 Hb_054865_100 Hb_066182_010--Hb_054865_100 Hb_000300_060 Hb_000300_060 Hb_066182_010--Hb_000300_060 Hb_005276_210 Hb_005276_210 Hb_066182_010--Hb_005276_210 Hb_002081_130 Hb_002081_130 Hb_066182_010--Hb_002081_130 Hb_002149_020 Hb_002149_020 Hb_066182_010--Hb_002149_020 Hb_000640_240 Hb_000640_240 Hb_066182_010--Hb_000640_240 Hb_143629_010--Hb_008887_050 Hb_001741_140 Hb_001741_140 Hb_143629_010--Hb_001741_140 Hb_000141_060 Hb_000141_060 Hb_143629_010--Hb_000141_060 Hb_171900_100 Hb_171900_100 Hb_143629_010--Hb_171900_100 Hb_031939_010 Hb_031939_010 Hb_143629_010--Hb_031939_010 Hb_000327_120--Hb_002685_140 Hb_007951_060 Hb_007951_060 Hb_000327_120--Hb_007951_060 Hb_001635_170 Hb_001635_170 Hb_000327_120--Hb_001635_170 Hb_000327_120--Hb_054865_100 Hb_001595_030 Hb_001595_030 Hb_000327_120--Hb_001595_030 Hb_006185_050 Hb_006185_050 Hb_000327_120--Hb_006185_050 Hb_001439_150 Hb_001439_150 Hb_002685_140--Hb_001439_150 Hb_011689_080 Hb_011689_080 Hb_002685_140--Hb_011689_080 Hb_001623_420 Hb_001623_420 Hb_002685_140--Hb_001623_420 Hb_002685_140--Hb_001635_170 Hb_002685_140--Hb_007576_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.1524 1.73378 2.15979 2.22242 6.02314 3.96109
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.19845 3.54923 2.69771 2.28807 0.640263

CAGE analysis