Hb_009838_120

Information

Type transcription factor
Description TF Family: AUX/IAA
Location Contig9838: 49742-51789
Sequence    

Annotation

kegg
ID rcu:RCOM_1217330
description Auxin-responsive protein IAA13, putative
nr
ID XP_012077608.1
description PREDICTED: auxin-responsive protein IAA13 isoform X1 [Jatropha curcas]
swissprot
ID Q38831
description Auxin-responsive protein IAA13 OS=Arabidopsis thaliana GN=IAA13 PE=1 SV=2
trembl
ID A0A067KM23
description Auxin-responsive protein OS=Jatropha curcas GN=JCGZ_12874 PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin-responsive protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64525: 49757-51961
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009838_120 0.0 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA13 isoform X1 [Jatropha curcas]
2 Hb_009627_020 0.071411868 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 34 [Jatropha curcas]
3 Hb_024868_010 0.0724076007 - - protein kinase, putative [Ricinus communis]
4 Hb_004659_100 0.0983888534 - - conserved hypothetical protein [Ricinus communis]
5 Hb_008021_040 0.0987761344 - - PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
6 Hb_005679_120 0.1118324129 - - hypothetical protein RCOM_0284080 [Ricinus communis]
7 Hb_139461_010 0.1125495075 desease resistance Gene Name: NB-ARC Cc-nbs-lrr resistance protein, putative [Theobroma cacao]
8 Hb_007625_030 0.1145951377 - - unknown [Medicago truncatula]
9 Hb_001645_030 0.1147733494 - - PREDICTED: probable auxin efflux carrier component 1b [Jatropha curcas]
10 Hb_000479_230 0.1176264265 - - hypothetical protein JCGZ_19903 [Jatropha curcas]
11 Hb_000866_320 0.1184432742 - - receptor protein kinase, putative [Ricinus communis]
12 Hb_000181_260 0.1216042629 - - PREDICTED: uncharacterized protein LOC105139156 [Populus euphratica]
13 Hb_189208_050 0.1223828845 - - PREDICTED: uncharacterized protein LOC105642694 isoform X2 [Jatropha curcas]
14 Hb_002236_010 0.1231362438 - - PREDICTED: bidirectional sugar transporter SWEET4 [Jatropha curcas]
15 Hb_033053_020 0.1245082049 - - hypothetical protein JCGZ_01204 [Jatropha curcas]
16 Hb_043789_010 0.1251564292 transcription factor TF Family: AP2 hypothetical protein VITISV_034131 [Vitis vinifera]
17 Hb_003216_140 0.1272772185 - - F-box protein SNE, putative [Ricinus communis]
18 Hb_003964_060 0.1276110225 - - PREDICTED: beta-glucosidase 40 [Jatropha curcas]
19 Hb_000631_100 0.1296136806 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Jatropha curcas]
20 Hb_087427_010 0.130815738 - - hypothetical protein PRUPE_ppa007748mg [Prunus persica]

Gene co-expression network

sample Hb_009838_120 Hb_009838_120 Hb_009627_020 Hb_009627_020 Hb_009838_120--Hb_009627_020 Hb_024868_010 Hb_024868_010 Hb_009838_120--Hb_024868_010 Hb_004659_100 Hb_004659_100 Hb_009838_120--Hb_004659_100 Hb_008021_040 Hb_008021_040 Hb_009838_120--Hb_008021_040 Hb_005679_120 Hb_005679_120 Hb_009838_120--Hb_005679_120 Hb_139461_010 Hb_139461_010 Hb_009838_120--Hb_139461_010 Hb_000479_230 Hb_000479_230 Hb_009627_020--Hb_000479_230 Hb_009627_020--Hb_024868_010 Hb_009627_020--Hb_005679_120 Hb_009627_020--Hb_004659_100 Hb_000631_100 Hb_000631_100 Hb_009627_020--Hb_000631_100 Hb_001645_030 Hb_001645_030 Hb_024868_010--Hb_001645_030 Hb_189208_050 Hb_189208_050 Hb_024868_010--Hb_189208_050 Hb_024868_010--Hb_000631_100 Hb_003216_140 Hb_003216_140 Hb_024868_010--Hb_003216_140 Hb_033053_020 Hb_033053_020 Hb_004659_100--Hb_033053_020 Hb_002897_030 Hb_002897_030 Hb_004659_100--Hb_002897_030 Hb_004659_100--Hb_024868_010 Hb_002325_050 Hb_002325_050 Hb_004659_100--Hb_002325_050 Hb_002641_140 Hb_002641_140 Hb_008021_040--Hb_002641_140 Hb_008021_040--Hb_139461_010 Hb_008021_040--Hb_189208_050 Hb_008021_040--Hb_024868_010 Hb_001048_070 Hb_001048_070 Hb_008021_040--Hb_001048_070 Hb_029142_040 Hb_029142_040 Hb_008021_040--Hb_029142_040 Hb_002236_010 Hb_002236_010 Hb_005679_120--Hb_002236_010 Hb_005679_120--Hb_000479_230 Hb_000454_200 Hb_000454_200 Hb_005679_120--Hb_000454_200 Hb_002553_070 Hb_002553_070 Hb_005679_120--Hb_002553_070 Hb_023956_010 Hb_023956_010 Hb_005679_120--Hb_023956_010 Hb_000181_260 Hb_000181_260 Hb_139461_010--Hb_000181_260 Hb_043789_010 Hb_043789_010 Hb_139461_010--Hb_043789_010 Hb_002811_110 Hb_002811_110 Hb_139461_010--Hb_002811_110 Hb_139461_010--Hb_001048_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.449174 5.29094 5.22352 16.515 0.0809714 0.1082
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0394685 0 0 7.73263 1.86572

CAGE analysis