Hb_009847_030

Information

Type -
Description -
Location Contig9847: 32727-34074
Sequence    

Annotation

kegg
ID pop:POPTR_0018s12240g
description POPTRDRAFT_911513; hypothetical protein
nr
ID XP_002324572.1
description zinc finger family protein [Populus trichocarpa]
swissprot
ID Q9C1X4
description Uncharacterized RING finger protein P32A8.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAP32A8.03c PE=3 SV=1
trembl
ID B9IMK4
description Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0018s12240g PE=4 SV=1
Gene Ontology
ID GO:0005515
description zinc finger family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64605: 32747-34080
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009847_030 0.0 - - zinc finger family protein [Populus trichocarpa]
2 Hb_000003_680 0.0903747066 transcription factor TF Family: MYB-related PREDICTED: myb-like protein H [Jatropha curcas]
3 Hb_102948_010 0.0912255418 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
4 Hb_000291_180 0.0929616645 - - PREDICTED: meiotically up-regulated gene 185 protein [Jatropha curcas]
5 Hb_005235_070 0.0979028346 - - PREDICTED: plastid lipid-associated protein 3, chloroplastic [Jatropha curcas]
6 Hb_001430_020 0.101846761 - - Actin-like ATPase superfamily protein isoform 1 [Theobroma cacao]
7 Hb_002218_020 0.1024447622 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
8 Hb_001269_670 0.1036674552 - - PREDICTED: uncharacterized protein LOC105630287 [Jatropha curcas]
9 Hb_001160_100 0.1048727616 - - PREDICTED: probable plastid-lipid-associated protein 6, chloroplastic [Jatropha curcas]
10 Hb_003883_010 0.1050961615 - - PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]
11 Hb_000349_270 0.1105497546 - - PREDICTED: uncharacterized protein ycf49 isoform X1 [Jatropha curcas]
12 Hb_002316_140 0.1109503705 - - PREDICTED: rac-like GTP-binding protein 3 [Populus euphratica]
13 Hb_000796_160 0.1152191776 - - PREDICTED: nifU-like protein 1, chloroplastic [Jatropha curcas]
14 Hb_002631_240 0.1168451132 - - JHL17M24.3 [Jatropha curcas]
15 Hb_000555_020 0.1169656767 - - APO protein 2, chloroplast precursor, putative [Ricinus communis]
16 Hb_014497_100 0.1174509108 - - PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
17 Hb_000537_100 0.1190803547 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
18 Hb_004586_430 0.1196185698 - - PREDICTED: 29 kDa ribonucleoprotein, chloroplastic [Jatropha curcas]
19 Hb_001675_140 0.119900014 - - hypothetical protein L484_026216 [Morus notabilis]
20 Hb_000663_020 0.1206012703 - - PREDICTED: alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_009847_030 Hb_009847_030 Hb_000003_680 Hb_000003_680 Hb_009847_030--Hb_000003_680 Hb_102948_010 Hb_102948_010 Hb_009847_030--Hb_102948_010 Hb_000291_180 Hb_000291_180 Hb_009847_030--Hb_000291_180 Hb_005235_070 Hb_005235_070 Hb_009847_030--Hb_005235_070 Hb_001430_020 Hb_001430_020 Hb_009847_030--Hb_001430_020 Hb_002218_020 Hb_002218_020 Hb_009847_030--Hb_002218_020 Hb_012286_020 Hb_012286_020 Hb_000003_680--Hb_012286_020 Hb_000787_080 Hb_000787_080 Hb_000003_680--Hb_000787_080 Hb_087313_010 Hb_087313_010 Hb_000003_680--Hb_087313_010 Hb_021576_150 Hb_021576_150 Hb_000003_680--Hb_021576_150 Hb_000003_680--Hb_002218_020 Hb_000003_680--Hb_102948_010 Hb_102948_010--Hb_002218_020 Hb_102948_010--Hb_001430_020 Hb_102948_010--Hb_087313_010 Hb_102948_010--Hb_005235_070 Hb_012438_030 Hb_012438_030 Hb_102948_010--Hb_012438_030 Hb_000555_020 Hb_000555_020 Hb_102948_010--Hb_000555_020 Hb_160271_010 Hb_160271_010 Hb_000291_180--Hb_160271_010 Hb_001882_010 Hb_001882_010 Hb_000291_180--Hb_001882_010 Hb_048093_010 Hb_048093_010 Hb_000291_180--Hb_048093_010 Hb_000108_020 Hb_000108_020 Hb_000291_180--Hb_000108_020 Hb_000680_010 Hb_000680_010 Hb_000291_180--Hb_000680_010 Hb_068079_010 Hb_068079_010 Hb_000291_180--Hb_068079_010 Hb_005235_070--Hb_000555_020 Hb_003883_010 Hb_003883_010 Hb_005235_070--Hb_003883_010 Hb_000107_340 Hb_000107_340 Hb_005235_070--Hb_000107_340 Hb_005235_070--Hb_002218_020 Hb_002107_050 Hb_002107_050 Hb_005235_070--Hb_002107_050 Hb_001430_020--Hb_002218_020 Hb_000802_130 Hb_000802_130 Hb_001430_020--Hb_000802_130 Hb_001430_020--Hb_003883_010 Hb_001430_020--Hb_005235_070 Hb_001430_020--Hb_000555_020 Hb_002218_020--Hb_012438_030 Hb_002218_020--Hb_087313_010 Hb_000663_020 Hb_000663_020 Hb_002218_020--Hb_000663_020 Hb_002218_020--Hb_003883_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.8143 51.9356 85.1085 59.3588 26.7959 22.0919
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.2768 37.7775 20.0591 11.3083 77.9052

CAGE analysis