Hb_009848_010

Information

Type -
Description -
Location Contig9848: 6166-18333
Sequence    

Annotation

kegg
ID cvr:CHLNCDRAFT_55752
description hypothetical protein
nr
ID KHG01039.1
description putative acyl-activating enzyme 16, chloroplastic -like protein [Gossypium arboreum]
swissprot
ID -
description -
trembl
ID A0A0B0MNF6
description Putative acyl-activating enzyme 16, chloroplastic-like protein OS=Gossypium arboreum GN=F383_23045 PE=4 SV=1
Gene Ontology
ID GO:0003824
description probable acyl-activating enzyme chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64606: 6084-6309 , PASA_asmbl_64607: 6484-44374
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009848_010 0.0 - - putative acyl-activating enzyme 16, chloroplastic -like protein [Gossypium arboreum]
2 Hb_001587_010 0.2199205336 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH25-like [Jatropha curcas]
3 Hb_009848_030 0.2271384726 - - long-chain-fatty-acid CoA ligase, putative [Ricinus communis]
4 Hb_002477_220 0.2413514295 - - hypothetical protein POPTR_0017s06650g [Populus trichocarpa]
5 Hb_012180_030 0.2583978962 - - unnamed protein product [Vitis vinifera]
6 Hb_002235_140 0.2596429748 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000735_170 0.2601725306 - - hypothetical protein JCGZ_15146 [Jatropha curcas]
8 Hb_004920_010 0.2632008155 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
9 Hb_000236_090 0.2655261426 - - hypothetical protein EUGRSUZ_H00030 [Eucalyptus grandis]
10 Hb_178884_010 0.2664820827 - - putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
11 Hb_002299_050 0.2677520704 - - PREDICTED: chalcone--flavonone isomerase isoform X1 [Pyrus x bretschneideri]
12 Hb_002273_090 0.2707818523 - - -
13 Hb_002273_060 0.2708556711 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000283_150 0.2716405978 - - Ankyrin repeat family protein [Theobroma cacao]
15 Hb_002391_370 0.2734640909 - - PREDICTED: aconitate hydratase 1 [Jatropha curcas]
16 Hb_001977_010 0.2752470229 - - PREDICTED: uncharacterized protein LOC105636485 isoform X2 [Jatropha curcas]
17 Hb_000136_060 0.2758070976 - - hypothetical protein POPTR_0016s06250g [Populus trichocarpa]
18 Hb_068804_020 0.2782609538 - - hypothetical protein AMTR_s00046p00231970 [Amborella trichopoda]
19 Hb_000130_060 0.2783808293 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
20 Hb_003640_030 0.2794695535 - - PREDICTED: uncharacterized protein LOC105647345 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_009848_010 Hb_009848_010 Hb_001587_010 Hb_001587_010 Hb_009848_010--Hb_001587_010 Hb_009848_030 Hb_009848_030 Hb_009848_010--Hb_009848_030 Hb_002477_220 Hb_002477_220 Hb_009848_010--Hb_002477_220 Hb_012180_030 Hb_012180_030 Hb_009848_010--Hb_012180_030 Hb_002235_140 Hb_002235_140 Hb_009848_010--Hb_002235_140 Hb_000735_170 Hb_000735_170 Hb_009848_010--Hb_000735_170 Hb_002407_080 Hb_002407_080 Hb_001587_010--Hb_002407_080 Hb_005273_040 Hb_005273_040 Hb_001587_010--Hb_005273_040 Hb_002299_050 Hb_002299_050 Hb_001587_010--Hb_002299_050 Hb_000209_110 Hb_000209_110 Hb_001587_010--Hb_000209_110 Hb_003160_020 Hb_003160_020 Hb_001587_010--Hb_003160_020 Hb_000032_310 Hb_000032_310 Hb_009848_030--Hb_000032_310 Hb_001989_020 Hb_001989_020 Hb_009848_030--Hb_001989_020 Hb_001396_260 Hb_001396_260 Hb_009848_030--Hb_001396_260 Hb_000521_170 Hb_000521_170 Hb_009848_030--Hb_000521_170 Hb_003656_120 Hb_003656_120 Hb_009848_030--Hb_003656_120 Hb_009848_040 Hb_009848_040 Hb_009848_030--Hb_009848_040 Hb_000283_150 Hb_000283_150 Hb_002477_220--Hb_000283_150 Hb_007380_040 Hb_007380_040 Hb_002477_220--Hb_007380_040 Hb_000406_060 Hb_000406_060 Hb_002477_220--Hb_000406_060 Hb_000022_170 Hb_000022_170 Hb_002477_220--Hb_000022_170 Hb_003640_030 Hb_003640_030 Hb_002477_220--Hb_003640_030 Hb_001636_020 Hb_001636_020 Hb_002477_220--Hb_001636_020 Hb_000136_060 Hb_000136_060 Hb_012180_030--Hb_000136_060 Hb_012180_040 Hb_012180_040 Hb_012180_030--Hb_012180_040 Hb_000158_100 Hb_000158_100 Hb_012180_030--Hb_000158_100 Hb_028912_040 Hb_028912_040 Hb_012180_030--Hb_028912_040 Hb_002092_090 Hb_002092_090 Hb_012180_030--Hb_002092_090 Hb_172970_010 Hb_172970_010 Hb_012180_030--Hb_172970_010 Hb_002918_090 Hb_002918_090 Hb_002235_140--Hb_002918_090 Hb_002235_140--Hb_009848_040 Hb_001396_150 Hb_001396_150 Hb_002235_140--Hb_001396_150 Hb_002235_140--Hb_009848_030 Hb_000375_370 Hb_000375_370 Hb_002235_140--Hb_000375_370 Hb_031089_030 Hb_031089_030 Hb_002235_140--Hb_031089_030 Hb_000940_170 Hb_000940_170 Hb_000735_170--Hb_000940_170 Hb_000130_070 Hb_000130_070 Hb_000735_170--Hb_000130_070 Hb_033555_010 Hb_033555_010 Hb_000735_170--Hb_033555_010 Hb_001631_100 Hb_001631_100 Hb_000735_170--Hb_001631_100 Hb_182680_010 Hb_182680_010 Hb_000735_170--Hb_182680_010 Hb_000735_170--Hb_002477_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.342328 1.45147 0.126651 0.394468 1.36514 3.49153
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.553671 0.0725317 0 3.88322 0.708422

CAGE analysis