Hb_009848_040

Information

Type -
Description -
Location Contig9848: 71465-75578
Sequence    

Annotation

kegg
ID mus:103994281
description probable acyl-activating enzyme 16, chloroplastic
nr
ID KJB61274.1
description hypothetical protein B456_009G349600 [Gossypium raimondii]
swissprot
ID P33121
description Long-chain-fatty-acid--CoA ligase 1 OS=Homo sapiens GN=ACSL1 PE=1 SV=1
trembl
ID A0A0D2TX14
description Gossypium raimondii chromosome 9, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_009G349600 PE=4 SV=1
Gene Ontology
ID GO:0003824
description probable acyl-activating enzyme chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64609: 73688-75606
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009848_040 0.0 - - hypothetical protein B456_009G349600 [Gossypium raimondii]
2 Hb_012423_010 0.1409133812 - - -
3 Hb_084429_010 0.1590898806 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 [Populus euphratica]
4 Hb_009848_030 0.159810149 - - long-chain-fatty-acid CoA ligase, putative [Ricinus communis]
5 Hb_004096_080 0.1684769925 - - PREDICTED: IST1 homolog [Jatropha curcas]
6 Hb_002235_140 0.1688083656 - - conserved hypothetical protein [Ricinus communis]
7 Hb_006588_150 0.1806432579 - - PREDICTED: steroid 5-alpha-reductase DET2 [Jatropha curcas]
8 Hb_001396_260 0.1820006316 - - PREDICTED: F-box only protein 6 [Jatropha curcas]
9 Hb_000649_010 0.1869955455 - - PREDICTED: adagio protein 3 [Jatropha curcas]
10 Hb_002918_090 0.1874936129 - - PREDICTED: auxin-repressed 12.5 kDa protein-like [Nelumbo nucifera]
11 Hb_002876_290 0.1899915661 - - PREDICTED: uncharacterized protein LOC104446353 [Eucalyptus grandis]
12 Hb_001301_230 0.1934024706 - - PREDICTED: uncharacterized protein LOC105632949 isoform X2 [Jatropha curcas]
13 Hb_002273_090 0.1976170463 - - -
14 Hb_006185_020 0.1980300945 - - PREDICTED: midasin [Jatropha curcas]
15 Hb_000853_030 0.2000854337 - - sucrose synthase 2 [Hevea brasiliensis]
16 Hb_009476_140 0.2006700907 transcription factor TF Family: bHLH hypothetical protein RCOM_0838610 [Ricinus communis]
17 Hb_000032_310 0.2015050996 - - ring finger protein, putative [Ricinus communis]
18 Hb_003211_010 0.2016791044 - - PREDICTED: uncharacterized protein LOC105635705 [Jatropha curcas]
19 Hb_000449_050 0.2030167715 - - Protein bem46, putative [Ricinus communis]
20 Hb_031089_030 0.2030199134 - - ubiquitin-conjugating enzyme E2 28 [Arabidopsis thaliana]

Gene co-expression network

sample Hb_009848_040 Hb_009848_040 Hb_012423_010 Hb_012423_010 Hb_009848_040--Hb_012423_010 Hb_084429_010 Hb_084429_010 Hb_009848_040--Hb_084429_010 Hb_009848_030 Hb_009848_030 Hb_009848_040--Hb_009848_030 Hb_004096_080 Hb_004096_080 Hb_009848_040--Hb_004096_080 Hb_002235_140 Hb_002235_140 Hb_009848_040--Hb_002235_140 Hb_006588_150 Hb_006588_150 Hb_009848_040--Hb_006588_150 Hb_000152_670 Hb_000152_670 Hb_012423_010--Hb_000152_670 Hb_003025_050 Hb_003025_050 Hb_012423_010--Hb_003025_050 Hb_167234_010 Hb_167234_010 Hb_012423_010--Hb_167234_010 Hb_002027_380 Hb_002027_380 Hb_012423_010--Hb_002027_380 Hb_000449_050 Hb_000449_050 Hb_012423_010--Hb_000449_050 Hb_001396_260 Hb_001396_260 Hb_084429_010--Hb_001396_260 Hb_084429_010--Hb_004096_080 Hb_031089_030 Hb_031089_030 Hb_084429_010--Hb_031089_030 Hb_007257_050 Hb_007257_050 Hb_084429_010--Hb_007257_050 Hb_000375_370 Hb_000375_370 Hb_084429_010--Hb_000375_370 Hb_002849_080 Hb_002849_080 Hb_084429_010--Hb_002849_080 Hb_000032_310 Hb_000032_310 Hb_009848_030--Hb_000032_310 Hb_001989_020 Hb_001989_020 Hb_009848_030--Hb_001989_020 Hb_009848_030--Hb_001396_260 Hb_000521_170 Hb_000521_170 Hb_009848_030--Hb_000521_170 Hb_003656_120 Hb_003656_120 Hb_009848_030--Hb_003656_120 Hb_004096_080--Hb_001396_260 Hb_015763_020 Hb_015763_020 Hb_004096_080--Hb_015763_020 Hb_002078_420 Hb_002078_420 Hb_004096_080--Hb_002078_420 Hb_114310_040 Hb_114310_040 Hb_004096_080--Hb_114310_040 Hb_011861_070 Hb_011861_070 Hb_004096_080--Hb_011861_070 Hb_002918_090 Hb_002918_090 Hb_002235_140--Hb_002918_090 Hb_001396_150 Hb_001396_150 Hb_002235_140--Hb_001396_150 Hb_002235_140--Hb_009848_030 Hb_002235_140--Hb_000375_370 Hb_002235_140--Hb_031089_030 Hb_000740_110 Hb_000740_110 Hb_006588_150--Hb_000740_110 Hb_002876_290 Hb_002876_290 Hb_006588_150--Hb_002876_290 Hb_001369_440 Hb_001369_440 Hb_006588_150--Hb_001369_440 Hb_003211_010 Hb_003211_010 Hb_006588_150--Hb_003211_010 Hb_022400_010 Hb_022400_010 Hb_006588_150--Hb_022400_010 Hb_005214_090 Hb_005214_090 Hb_006588_150--Hb_005214_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.34159 5.17819 0.541701 1.30419 2.27326 5.08965
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.70178 1.10528 0.104531 3.96573 0.115934

CAGE analysis