Hb_009848_060

Information

Type -
Description -
Location Contig9848: 95241-99923
Sequence    

Annotation

kegg
ID gmx:100809066
description putative DNA repair protein RAD23-3-like
nr
ID ACU18529.1
description unknown [Glycine max]
swissprot
ID Q84L31
description Ubiquitin receptor RAD23c OS=Arabidopsis thaliana GN=RAD23C PE=1 SV=2
trembl
ID C6T9M7
description Putative uncharacterized protein OS=Glycine max PE=2 SV=1
Gene Ontology
ID GO:0005634
description dna repair protein rad23-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64610: 97845-99164
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009848_060 0.0 - - unknown [Glycine max]
2 Hb_000260_730 0.1430317331 - - -
3 Hb_002016_130 0.1460414163 desease resistance Gene Name: ABC_membrane multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
4 Hb_030885_010 0.1479716313 - - -
5 Hb_004052_060 0.1506162219 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
6 Hb_009848_050 0.1506233811 - - PREDICTED: proline-rich receptor-like protein kinase PERK13 [Elaeis guineensis]
7 Hb_000574_030 0.1513224888 desease resistance Gene Name: Glyco_hydro_38 Disease resistance protein RPS5, putative [Ricinus communis]
8 Hb_001005_040 0.1598430601 - - -
9 Hb_004520_010 0.1634739822 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
10 Hb_001571_020 0.1638970221 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Citrus sinensis]
11 Hb_001856_280 0.1646545707 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
12 Hb_035651_010 0.1757402709 - - receptor-kinase, putative [Ricinus communis]
13 Hb_002529_070 0.1761269112 - - PREDICTED: putative late blight resistance protein homolog R1B-19 [Pyrus x bretschneideri]
14 Hb_008144_010 0.177917357 - - hypothetical protein VITISV_015004 [Vitis vinifera]
15 Hb_029727_010 0.179288422 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
16 Hb_001288_050 0.1811129903 - - -
17 Hb_010490_060 0.1837347112 - - PREDICTED: uncharacterized protein LOC105767021 [Gossypium raimondii]
18 Hb_069147_010 0.1861247104 desease resistance Gene Name: zf-BED PREDICTED: probable disease resistance protein At4g27220 isoform X1 [Populus euphratica]
19 Hb_004487_060 0.1897387856 - - cytochrome P450, putative [Ricinus communis]
20 Hb_000318_400 0.1898755896 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_009848_060 Hb_009848_060 Hb_000260_730 Hb_000260_730 Hb_009848_060--Hb_000260_730 Hb_002016_130 Hb_002016_130 Hb_009848_060--Hb_002016_130 Hb_030885_010 Hb_030885_010 Hb_009848_060--Hb_030885_010 Hb_004052_060 Hb_004052_060 Hb_009848_060--Hb_004052_060 Hb_009848_050 Hb_009848_050 Hb_009848_060--Hb_009848_050 Hb_000574_030 Hb_000574_030 Hb_009848_060--Hb_000574_030 Hb_017225_030 Hb_017225_030 Hb_000260_730--Hb_017225_030 Hb_008834_010 Hb_008834_010 Hb_000260_730--Hb_008834_010 Hb_029727_010 Hb_029727_010 Hb_000260_730--Hb_029727_010 Hb_001856_280 Hb_001856_280 Hb_000260_730--Hb_001856_280 Hb_001005_040 Hb_001005_040 Hb_000260_730--Hb_001005_040 Hb_000169_100 Hb_000169_100 Hb_000260_730--Hb_000169_100 Hb_002016_130--Hb_001005_040 Hb_002016_130--Hb_000574_030 Hb_004487_060 Hb_004487_060 Hb_002016_130--Hb_004487_060 Hb_001288_050 Hb_001288_050 Hb_002016_130--Hb_001288_050 Hb_000416_010 Hb_000416_010 Hb_002016_130--Hb_000416_010 Hb_001301_010 Hb_001301_010 Hb_002016_130--Hb_001301_010 Hb_010129_020 Hb_010129_020 Hb_030885_010--Hb_010129_020 Hb_030885_010--Hb_001856_280 Hb_030885_010--Hb_029727_010 Hb_125116_020 Hb_125116_020 Hb_030885_010--Hb_125116_020 Hb_002529_070 Hb_002529_070 Hb_030885_010--Hb_002529_070 Hb_004052_060--Hb_125116_020 Hb_095835_010 Hb_095835_010 Hb_004052_060--Hb_095835_010 Hb_004052_060--Hb_010129_020 Hb_005843_060 Hb_005843_060 Hb_004052_060--Hb_005843_060 Hb_004052_060--Hb_029727_010 Hb_010490_060 Hb_010490_060 Hb_009848_050--Hb_010490_060 Hb_185058_020 Hb_185058_020 Hb_009848_050--Hb_185058_020 Hb_014324_010 Hb_014324_010 Hb_009848_050--Hb_014324_010 Hb_000137_060 Hb_000137_060 Hb_009848_050--Hb_000137_060 Hb_001571_020 Hb_001571_020 Hb_009848_050--Hb_001571_020 Hb_000574_030--Hb_001005_040 Hb_000574_030--Hb_004487_060 Hb_000574_030--Hb_001288_050 Hb_020831_070 Hb_020831_070 Hb_000574_030--Hb_020831_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0354212 0.373911 0.435649 0.268472 0 0.0185673
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0404494 0.0318182 0.118396 2.34516 3.88566

CAGE analysis