Hb_009851_010

Information

Type -
Description -
Location Contig9851: 8869-12530
Sequence    

Annotation

kegg
ID pxb:103935932
description beta-amylase 3, chloroplastic-like
nr
ID XP_012086671.1
description PREDICTED: beta-amylase 3, chloroplastic-like [Jatropha curcas]
swissprot
ID Q9LIR6
description Beta-amylase 1, chloroplastic OS=Arabidopsis thaliana GN=BAM1 PE=1 SV=1
trembl
ID A0A067JN24
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20413 PE=3 SV=1
Gene Ontology
ID GO:0016161
description beta-amylase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64633: 9145-12498
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009851_010 0.0 - - PREDICTED: beta-amylase 3, chloroplastic-like [Jatropha curcas]
2 Hb_027402_020 0.1023029516 - - PREDICTED: uncharacterized endoplasmic reticulum membrane protein C16E8.02 [Jatropha curcas]
3 Hb_000676_020 0.1097882486 - - PREDICTED: uncharacterized protein LOC105645386 [Jatropha curcas]
4 Hb_000331_420 0.1175792227 - - PREDICTED: nucleoside diphosphate kinase 2, chloroplastic [Jatropha curcas]
5 Hb_068194_010 0.1207588931 - - hypothetical protein POPTR_0010s23740g [Populus trichocarpa]
6 Hb_002498_160 0.1346635954 - - PREDICTED: uncharacterized protein LOC105649315 [Jatropha curcas]
7 Hb_001102_050 0.1349338825 - - PREDICTED: fatty-acid-binding protein 3 [Jatropha curcas]
8 Hb_000820_140 0.1364994218 - - histone H4 [Zea mays]
9 Hb_002205_140 0.138944652 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2b [Jatropha curcas]
10 Hb_021732_010 0.1414498992 - - biotin carboxylase [Vernicia fordii]
11 Hb_000152_180 0.1443473444 - - PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Jatropha curcas]
12 Hb_000331_570 0.1469165322 - - PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Jatropha curcas]
13 Hb_002027_320 0.1485569597 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
14 Hb_002871_040 0.1501823152 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Populus euphratica]
15 Hb_007199_020 0.1517366089 - - hypothetical protein CICLE_v10028570mg [Citrus clementina]
16 Hb_000122_190 0.1532271602 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic [Jatropha curcas]
17 Hb_169209_010 0.1545732084 - - PREDICTED: porphobilinogen deaminase, chloroplastic [Jatropha curcas]
18 Hb_012653_030 0.1564618272 - - PREDICTED: probable ribose-5-phosphate isomerase 4, chloroplastic isoform X2 [Jatropha curcas]
19 Hb_000364_170 0.1573481169 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase CLF [Jatropha curcas]
20 Hb_000442_040 0.1627876747 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_009851_010 Hb_009851_010 Hb_027402_020 Hb_027402_020 Hb_009851_010--Hb_027402_020 Hb_000676_020 Hb_000676_020 Hb_009851_010--Hb_000676_020 Hb_000331_420 Hb_000331_420 Hb_009851_010--Hb_000331_420 Hb_068194_010 Hb_068194_010 Hb_009851_010--Hb_068194_010 Hb_002498_160 Hb_002498_160 Hb_009851_010--Hb_002498_160 Hb_001102_050 Hb_001102_050 Hb_009851_010--Hb_001102_050 Hb_000364_170 Hb_000364_170 Hb_027402_020--Hb_000364_170 Hb_006775_120 Hb_006775_120 Hb_027402_020--Hb_006775_120 Hb_002205_140 Hb_002205_140 Hb_027402_020--Hb_002205_140 Hb_000406_030 Hb_000406_030 Hb_027402_020--Hb_000406_030 Hb_000331_570 Hb_000331_570 Hb_027402_020--Hb_000331_570 Hb_000676_020--Hb_068194_010 Hb_027506_040 Hb_027506_040 Hb_000676_020--Hb_027506_040 Hb_000676_020--Hb_002498_160 Hb_000820_140 Hb_000820_140 Hb_000676_020--Hb_000820_140 Hb_000676_020--Hb_002205_140 Hb_000331_420--Hb_000331_570 Hb_000189_130 Hb_000189_130 Hb_000331_420--Hb_000189_130 Hb_005214_170 Hb_005214_170 Hb_000331_420--Hb_005214_170 Hb_002871_040 Hb_002871_040 Hb_000331_420--Hb_002871_040 Hb_000152_180 Hb_000152_180 Hb_000331_420--Hb_000152_180 Hb_068194_010--Hb_000820_140 Hb_006445_020 Hb_006445_020 Hb_068194_010--Hb_006445_020 Hb_068194_010--Hb_001102_050 Hb_001322_230 Hb_001322_230 Hb_068194_010--Hb_001322_230 Hb_169209_010 Hb_169209_010 Hb_002498_160--Hb_169209_010 Hb_000473_050 Hb_000473_050 Hb_002498_160--Hb_000473_050 Hb_000608_390 Hb_000608_390 Hb_002498_160--Hb_000608_390 Hb_002044_020 Hb_002044_020 Hb_002498_160--Hb_002044_020 Hb_002986_090 Hb_002986_090 Hb_002498_160--Hb_002986_090 Hb_000926_080 Hb_000926_080 Hb_001102_050--Hb_000926_080 Hb_002027_320 Hb_002027_320 Hb_001102_050--Hb_002027_320 Hb_001102_050--Hb_002871_040 Hb_001804_090 Hb_001804_090 Hb_001102_050--Hb_001804_090 Hb_003835_110 Hb_003835_110 Hb_001102_050--Hb_003835_110 Hb_000003_780 Hb_000003_780 Hb_001102_050--Hb_000003_780
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.78469 0.470523 11.0304 3.29598 0.764548 0.886238
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.45097 2.17186 3.12027 3.01817 5.13646

CAGE analysis