Hb_009851_040

Information

Type -
Description -
Location Contig9851: 37740-38193
Sequence    

Annotation

kegg
ID rcu:RCOM_1312270
description hypothetical protein
nr
ID XP_002518864.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RYP5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1312270 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64634: 37709-38401
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009851_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005001_010 0.108386697 - - GAST1 protein precursor, putative [Ricinus communis]
3 Hb_045786_010 0.1153701562 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
4 Hb_000628_100 0.1643380326 - - hypothetical protein MTR_1g019660 [Medicago truncatula]
5 Hb_000172_150 0.1689748701 - - PREDICTED: protein UPSTREAM OF FLC [Populus euphratica]
6 Hb_001502_010 0.1691764295 - - hypothetical protein JCGZ_04288 [Jatropha curcas]
7 Hb_020805_160 0.1696180004 - - -
8 Hb_000579_210 0.1714293924 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
9 Hb_002374_070 0.1732165918 - - amino acid transporter, putative [Ricinus communis]
10 Hb_007125_020 0.1734274321 - - hypothetical protein POPTR_0003s18010g [Populus trichocarpa]
11 Hb_008200_010 0.1737328301 - - PREDICTED: ABC transporter G family member 14-like isoform X1 [Jatropha curcas]
12 Hb_002783_210 0.1742722991 - - PREDICTED: uncharacterized protein LOC105635341 [Jatropha curcas]
13 Hb_008566_070 0.1757181249 - - conserved hypothetical protein [Ricinus communis]
14 Hb_008196_010 0.1757327998 - - unnamed protein product [Coffea canephora]
15 Hb_108216_030 0.1765058394 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
16 Hb_001766_140 0.1774733522 - - hypothetical protein JCGZ_18656 [Jatropha curcas]
17 Hb_071079_060 0.1780595119 - - PREDICTED: uncharacterized protein LOC105113464 [Populus euphratica]
18 Hb_005695_050 0.1823499528 - - PREDICTED: sulfate transporter 1.3-like [Jatropha curcas]
19 Hb_000270_790 0.1828994244 - - hypothetical protein JCGZ_11498 [Jatropha curcas]
20 Hb_006187_020 0.1843126948 - - PREDICTED: WAT1-related protein At5g07050-like [Populus euphratica]

Gene co-expression network

sample Hb_009851_040 Hb_009851_040 Hb_005001_010 Hb_005001_010 Hb_009851_040--Hb_005001_010 Hb_045786_010 Hb_045786_010 Hb_009851_040--Hb_045786_010 Hb_000628_100 Hb_000628_100 Hb_009851_040--Hb_000628_100 Hb_000172_150 Hb_000172_150 Hb_009851_040--Hb_000172_150 Hb_001502_010 Hb_001502_010 Hb_009851_040--Hb_001502_010 Hb_020805_160 Hb_020805_160 Hb_009851_040--Hb_020805_160 Hb_005001_010--Hb_020805_160 Hb_007951_090 Hb_007951_090 Hb_005001_010--Hb_007951_090 Hb_007125_020 Hb_007125_020 Hb_005001_010--Hb_007125_020 Hb_005001_010--Hb_045786_010 Hb_071079_060 Hb_071079_060 Hb_005001_010--Hb_071079_060 Hb_000579_210 Hb_000579_210 Hb_045786_010--Hb_000579_210 Hb_000628_060 Hb_000628_060 Hb_045786_010--Hb_000628_060 Hb_045786_010--Hb_000628_100 Hb_008196_010 Hb_008196_010 Hb_045786_010--Hb_008196_010 Hb_000270_790 Hb_000270_790 Hb_045786_010--Hb_000270_790 Hb_002025_190 Hb_002025_190 Hb_000628_100--Hb_002025_190 Hb_000999_060 Hb_000999_060 Hb_000628_100--Hb_000999_060 Hb_000164_250 Hb_000164_250 Hb_000628_100--Hb_000164_250 Hb_003777_100 Hb_003777_100 Hb_000628_100--Hb_003777_100 Hb_005695_050 Hb_005695_050 Hb_000628_100--Hb_005695_050 Hb_009851_120 Hb_009851_120 Hb_000628_100--Hb_009851_120 Hb_000860_030 Hb_000860_030 Hb_000172_150--Hb_000860_030 Hb_000270_530 Hb_000270_530 Hb_000172_150--Hb_000270_530 Hb_001255_030 Hb_001255_030 Hb_000172_150--Hb_001255_030 Hb_000378_030 Hb_000378_030 Hb_000172_150--Hb_000378_030 Hb_004757_040 Hb_004757_040 Hb_000172_150--Hb_004757_040 Hb_000705_070 Hb_000705_070 Hb_000172_150--Hb_000705_070 Hb_008200_010 Hb_008200_010 Hb_001502_010--Hb_008200_010 Hb_027402_110 Hb_027402_110 Hb_001502_010--Hb_027402_110 Hb_000007_020 Hb_000007_020 Hb_001502_010--Hb_000007_020 Hb_000201_050 Hb_000201_050 Hb_001502_010--Hb_000201_050 Hb_001584_250 Hb_001584_250 Hb_001502_010--Hb_001584_250 Hb_000429_080 Hb_000429_080 Hb_001502_010--Hb_000429_080 Hb_143933_010 Hb_143933_010 Hb_020805_160--Hb_143933_010 Hb_130739_010 Hb_130739_010 Hb_020805_160--Hb_130739_010 Hb_020805_160--Hb_071079_060 Hb_119600_020 Hb_119600_020 Hb_020805_160--Hb_119600_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.76385 46.4995 14.1767 136.896 4.98365 0.274837
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.99152

CAGE analysis