Hb_009851_050

Information

Type -
Description -
Location Contig9851: 38989-43222
Sequence    

Annotation

kegg
ID rcu:RCOM_1312260
description kinesin light chain, putative
nr
ID XP_012086672.1
description PREDICTED: nephrocystin-3 [Jatropha curcas]
swissprot
ID Q6AZT7
description Nephrocystin-3 OS=Xenopus laevis GN=nphp3 PE=2 SV=1
trembl
ID A0A067K0F6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20415 PE=4 SV=1
Gene Ontology
ID GO:0005886
description kinesin light

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64634: 37709-38401 , PASA_asmbl_64635: 39237-43444
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009851_050 0.0 - - PREDICTED: nephrocystin-3 [Jatropha curcas]
2 Hb_000008_270 0.0919142011 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein REVOLUTA [Jatropha curcas]
3 Hb_002631_070 0.0956063945 - - PREDICTED: uncharacterized membrane protein At1g16860-like [Jatropha curcas]
4 Hb_017295_010 0.1050401164 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
5 Hb_003994_280 0.1060179518 - - PREDICTED: uncharacterized membrane protein At1g16860-like [Jatropha curcas]
6 Hb_028707_080 0.1091562798 - - plasma membrane aquaporin 1 [Hevea brasiliensis]
7 Hb_009529_030 0.1093245233 - - PREDICTED: transmembrane protein 120 homolog [Jatropha curcas]
8 Hb_004306_040 0.1101154584 - - PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]
9 Hb_000048_060 0.111082347 - - PREDICTED: probable apyrase 7 isoform X1 [Jatropha curcas]
10 Hb_001018_130 0.1117931696 - - PREDICTED: uncharacterized protein LOC105638260 [Jatropha curcas]
11 Hb_001948_130 0.1134928226 - - PREDICTED: uncharacterized protein LOC105638579 [Jatropha curcas]
12 Hb_001018_110 0.1156208054 - - unnamed protein product [Coffea canephora]
13 Hb_000345_360 0.1168184186 - - PREDICTED: protein AUXIN RESPONSE 4 [Jatropha curcas]
14 Hb_001882_050 0.1179719089 - - hydroxysteroid dehydrogenase, putative [Ricinus communis]
15 Hb_000890_230 0.1184066921 - - hypothetical protein JCGZ_02013 [Jatropha curcas]
16 Hb_002078_160 0.1202416796 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
17 Hb_004223_290 0.1226275145 - - PREDICTED: protein IQ-DOMAIN 32 [Jatropha curcas]
18 Hb_001640_030 0.1227994536 - - PREDICTED: uncharacterized protein LOC105630021 [Jatropha curcas]
19 Hb_000107_080 0.1241721153 - - PREDICTED: uncharacterized protein LOC105641009 [Jatropha curcas]
20 Hb_002828_020 0.1258448367 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_009851_050 Hb_009851_050 Hb_000008_270 Hb_000008_270 Hb_009851_050--Hb_000008_270 Hb_002631_070 Hb_002631_070 Hb_009851_050--Hb_002631_070 Hb_017295_010 Hb_017295_010 Hb_009851_050--Hb_017295_010 Hb_003994_280 Hb_003994_280 Hb_009851_050--Hb_003994_280 Hb_028707_080 Hb_028707_080 Hb_009851_050--Hb_028707_080 Hb_009529_030 Hb_009529_030 Hb_009851_050--Hb_009529_030 Hb_005227_010 Hb_005227_010 Hb_000008_270--Hb_005227_010 Hb_000008_270--Hb_017295_010 Hb_000107_210 Hb_000107_210 Hb_000008_270--Hb_000107_210 Hb_001109_060 Hb_001109_060 Hb_000008_270--Hb_001109_060 Hb_000008_270--Hb_009529_030 Hb_001640_030 Hb_001640_030 Hb_002631_070--Hb_001640_030 Hb_002631_070--Hb_003994_280 Hb_000579_240 Hb_000579_240 Hb_002631_070--Hb_000579_240 Hb_000004_030 Hb_000004_030 Hb_002631_070--Hb_000004_030 Hb_004680_120 Hb_004680_120 Hb_002631_070--Hb_004680_120 Hb_017295_010--Hb_000107_210 Hb_017295_010--Hb_009529_030 Hb_017295_010--Hb_005227_010 Hb_002273_120 Hb_002273_120 Hb_017295_010--Hb_002273_120 Hb_017295_010--Hb_001109_060 Hb_003994_280--Hb_001640_030 Hb_000213_010 Hb_000213_010 Hb_003994_280--Hb_000213_010 Hb_000048_060 Hb_000048_060 Hb_003994_280--Hb_000048_060 Hb_001018_110 Hb_001018_110 Hb_003994_280--Hb_001018_110 Hb_090051_030 Hb_090051_030 Hb_003994_280--Hb_090051_030 Hb_004306_040 Hb_004306_040 Hb_028707_080--Hb_004306_040 Hb_000230_180 Hb_000230_180 Hb_028707_080--Hb_000230_180 Hb_002498_050 Hb_002498_050 Hb_028707_080--Hb_002498_050 Hb_001546_070 Hb_001546_070 Hb_028707_080--Hb_001546_070 Hb_000664_110 Hb_000664_110 Hb_028707_080--Hb_000664_110 Hb_009529_030--Hb_002273_120 Hb_000362_150 Hb_000362_150 Hb_009529_030--Hb_000362_150 Hb_002785_050 Hb_002785_050 Hb_009529_030--Hb_002785_050 Hb_032050_040 Hb_032050_040 Hb_009529_030--Hb_032050_040 Hb_000345_360 Hb_000345_360 Hb_009529_030--Hb_000345_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.6075 28.2086 20.9093 99.9461 68.0898 62.9322
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.0359 17.4759 35.2814 25.8209 46.4395

CAGE analysis