Hb_009851_070

Information

Type -
Description -
Location Contig9851: 69722-71158
Sequence    

Annotation

kegg
ID rcu:RCOM_1312220
description cdk8, putative (EC:2.7.11.23)
nr
ID XP_012086675.1
description PREDICTED: cyclin-dependent kinase E-1 [Jatropha curcas]
swissprot
ID Q84TI6
description Cyclin-dependent kinase E-1 OS=Arabidopsis thaliana GN=CDKE-1 PE=1 SV=2
trembl
ID A0A067JN28
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20418 PE=4 SV=1
Gene Ontology
ID GO:0005524
description cyclin-dependent kinase e-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009851_070 0.0 - - PREDICTED: cyclin-dependent kinase E-1 [Jatropha curcas]
2 Hb_000796_030 0.0671616513 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Jatropha curcas]
3 Hb_000009_600 0.0672014772 - - PREDICTED: uncharacterized protein LOC105639637 [Jatropha curcas]
4 Hb_002234_170 0.0706827859 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Jatropha curcas]
5 Hb_000174_220 0.0740566719 - - cohesin subunit rad21, putative [Ricinus communis]
6 Hb_009503_030 0.074628045 - - protein dimerization, putative [Ricinus communis]
7 Hb_003785_040 0.0770677963 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
8 Hb_183963_030 0.0785596229 - - DNA binding protein, putative [Ricinus communis]
9 Hb_001967_030 0.0809625213 - - PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]
10 Hb_014267_010 0.0816235004 - - PREDICTED: dnaJ homolog subfamily C GRV2 isoform X1 [Jatropha curcas]
11 Hb_001213_050 0.0826969226 - - PREDICTED: uncharacterized protein LOC105646665 isoform X1 [Jatropha curcas]
12 Hb_002235_300 0.0841348553 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15280 isoform X1 [Jatropha curcas]
13 Hb_002615_090 0.0861909136 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
14 Hb_001818_070 0.0878888153 - - carbon catabolite repressor protein, putative [Ricinus communis]
15 Hb_000502_050 0.0883853102 transcription factor TF Family: HSF Heat shock factor protein HSF8, putative [Ricinus communis]
16 Hb_002188_110 0.0898492311 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
17 Hb_002783_040 0.0900455237 transcription factor TF Family: IWS1 -
18 Hb_000780_230 0.0902945769 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
19 Hb_140506_010 0.0911760294 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like [Jatropha curcas]
20 Hb_015807_070 0.0916845013 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]

Gene co-expression network

sample Hb_009851_070 Hb_009851_070 Hb_000796_030 Hb_000796_030 Hb_009851_070--Hb_000796_030 Hb_000009_600 Hb_000009_600 Hb_009851_070--Hb_000009_600 Hb_002234_170 Hb_002234_170 Hb_009851_070--Hb_002234_170 Hb_000174_220 Hb_000174_220 Hb_009851_070--Hb_000174_220 Hb_009503_030 Hb_009503_030 Hb_009851_070--Hb_009503_030 Hb_003785_040 Hb_003785_040 Hb_009851_070--Hb_003785_040 Hb_000796_030--Hb_009503_030 Hb_000780_230 Hb_000780_230 Hb_000796_030--Hb_000780_230 Hb_002025_020 Hb_002025_020 Hb_000796_030--Hb_002025_020 Hb_003029_110 Hb_003029_110 Hb_000796_030--Hb_003029_110 Hb_014267_010 Hb_014267_010 Hb_000796_030--Hb_014267_010 Hb_009545_100 Hb_009545_100 Hb_000796_030--Hb_009545_100 Hb_000796_040 Hb_000796_040 Hb_000009_600--Hb_000796_040 Hb_000009_600--Hb_002234_170 Hb_000853_210 Hb_000853_210 Hb_000009_600--Hb_000853_210 Hb_000009_600--Hb_009503_030 Hb_002235_300 Hb_002235_300 Hb_000009_600--Hb_002235_300 Hb_003494_020 Hb_003494_020 Hb_002234_170--Hb_003494_020 Hb_002783_040 Hb_002783_040 Hb_002234_170--Hb_002783_040 Hb_000049_260 Hb_000049_260 Hb_002234_170--Hb_000049_260 Hb_002798_070 Hb_002798_070 Hb_002234_170--Hb_002798_070 Hb_006649_050 Hb_006649_050 Hb_002234_170--Hb_006649_050 Hb_000574_400 Hb_000574_400 Hb_002234_170--Hb_000574_400 Hb_000139_090 Hb_000139_090 Hb_000174_220--Hb_000139_090 Hb_015807_070 Hb_015807_070 Hb_000174_220--Hb_015807_070 Hb_000174_220--Hb_002235_300 Hb_045793_010 Hb_045793_010 Hb_000174_220--Hb_045793_010 Hb_000174_220--Hb_003785_040 Hb_001247_070 Hb_001247_070 Hb_000174_220--Hb_001247_070 Hb_009503_030--Hb_003785_040 Hb_000574_440 Hb_000574_440 Hb_009503_030--Hb_000574_440 Hb_006420_040 Hb_006420_040 Hb_009503_030--Hb_006420_040 Hb_009503_030--Hb_009545_100 Hb_000502_050 Hb_000502_050 Hb_009503_030--Hb_000502_050 Hb_002615_090 Hb_002615_090 Hb_003785_040--Hb_002615_090 Hb_031527_020 Hb_031527_020 Hb_003785_040--Hb_031527_020 Hb_004128_050 Hb_004128_050 Hb_003785_040--Hb_004128_050 Hb_000395_130 Hb_000395_130 Hb_003785_040--Hb_000395_130 Hb_000092_020 Hb_000092_020 Hb_003785_040--Hb_000092_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.5925 15.4777 5.50172 6.66293 14.7484 12.1143
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.92236 9.06156 12.7834 6.41352 9.81158

CAGE analysis