Hb_009851_100

Information

Type -
Description -
Location Contig9851: 95948-100310
Sequence    

Annotation

kegg
ID rcu:RCOM_1312190
description 26S proteasome non-atpase regulatory subunit, putative
nr
ID XP_012078432.1
description PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
swissprot
ID Q9SGW3
description 26S proteasome non-ATPase regulatory subunit 8 homolog A OS=Arabidopsis thaliana GN=RPN12A PE=1 SV=1
trembl
ID A0A067LFI5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03117 PE=4 SV=1
Gene Ontology
ID GO:0005838
description 26s proteasome non-atpase regulatory subunit 8 homolog a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64641: 95970-100237 , PASA_asmbl_64642: 95970-100237 , PASA_asmbl_64644: 100988-101157
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009851_100 0.0 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
2 Hb_002571_020 0.0573075412 - - PREDICTED: uncharacterized protein LOC105132457 isoform X12 [Populus euphratica]
3 Hb_000312_090 0.061754984 - - PREDICTED: uncharacterized protein LOC105645369 [Jatropha curcas]
4 Hb_001045_080 0.0639013199 - - PREDICTED: uncharacterized protein LOC105646704 [Jatropha curcas]
5 Hb_002835_320 0.0656479608 - - 60S ribosomal protein L27B [Hevea brasiliensis]
6 Hb_000526_150 0.0693661723 - - hypothetical protein POPTR_0019s10790g, partial [Populus trichocarpa]
7 Hb_001269_270 0.0723305403 - - 60S ribosomal protein L27B [Hevea brasiliensis]
8 Hb_003125_150 0.0723663817 - - PREDICTED: protein transport protein Sec61 subunit gamma [Jatropha curcas]
9 Hb_000212_260 0.0768349984 - - acyl-carrier-protein [Triadica sebifera]
10 Hb_000617_090 0.0785302899 - - hypoia-responsive family protein 4 [Hevea brasiliensis]
11 Hb_001638_260 0.0812041166 - - PREDICTED: 60S acidic ribosomal protein P1 [Vitis vinifera]
12 Hb_005590_020 0.0829833584 - - hypothetical protein CICLE_v10010008mg [Citrus clementina]
13 Hb_000120_750 0.0842203845 desease resistance Gene Name: NTPase_1 ATP binding protein, putative [Ricinus communis]
14 Hb_002431_050 0.0845658028 - - PREDICTED: probable protein phosphatase 2C 11 [Jatropha curcas]
15 Hb_003376_130 0.0849909373 transcription factor TF Family: S1Fa-like DNA-binding protein S1FA, putative [Ricinus communis]
16 Hb_010672_060 0.0852254334 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
17 Hb_000025_600 0.0853276612 - - PREDICTED: 30S ribosomal protein S17, chloroplastic-like [Jatropha curcas]
18 Hb_010672_070 0.0868845459 - - hypothetical protein ZEAMMB73_607937, partial [Zea mays]
19 Hb_089140_100 0.0875782881 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
20 Hb_010810_020 0.0884746008 - - PREDICTED: uncharacterized protein LOC105638766 [Jatropha curcas]

Gene co-expression network

sample Hb_009851_100 Hb_009851_100 Hb_002571_020 Hb_002571_020 Hb_009851_100--Hb_002571_020 Hb_000312_090 Hb_000312_090 Hb_009851_100--Hb_000312_090 Hb_001045_080 Hb_001045_080 Hb_009851_100--Hb_001045_080 Hb_002835_320 Hb_002835_320 Hb_009851_100--Hb_002835_320 Hb_000526_150 Hb_000526_150 Hb_009851_100--Hb_000526_150 Hb_001269_270 Hb_001269_270 Hb_009851_100--Hb_001269_270 Hb_000120_750 Hb_000120_750 Hb_002571_020--Hb_000120_750 Hb_000484_020 Hb_000484_020 Hb_002571_020--Hb_000484_020 Hb_002571_020--Hb_001045_080 Hb_003376_130 Hb_003376_130 Hb_002571_020--Hb_003376_130 Hb_003125_150 Hb_003125_150 Hb_002571_020--Hb_003125_150 Hb_000617_090 Hb_000617_090 Hb_000312_090--Hb_000617_090 Hb_001221_310 Hb_001221_310 Hb_000312_090--Hb_001221_310 Hb_000312_090--Hb_003125_150 Hb_000312_090--Hb_001045_080 Hb_000312_090--Hb_002835_320 Hb_001045_080--Hb_003125_150 Hb_001268_140 Hb_001268_140 Hb_001045_080--Hb_001268_140 Hb_001045_080--Hb_001269_270 Hb_000046_260 Hb_000046_260 Hb_001045_080--Hb_000046_260 Hb_000163_130 Hb_000163_130 Hb_002835_320--Hb_000163_130 Hb_148930_010 Hb_148930_010 Hb_002835_320--Hb_148930_010 Hb_003053_030 Hb_003053_030 Hb_002835_320--Hb_003053_030 Hb_001433_050 Hb_001433_050 Hb_002835_320--Hb_001433_050 Hb_000526_150--Hb_001269_270 Hb_001638_260 Hb_001638_260 Hb_000526_150--Hb_001638_260 Hb_000545_150 Hb_000545_150 Hb_000526_150--Hb_000545_150 Hb_000634_050 Hb_000634_050 Hb_000526_150--Hb_000634_050 Hb_001818_020 Hb_001818_020 Hb_000526_150--Hb_001818_020 Hb_001269_270--Hb_003125_150 Hb_001269_270--Hb_001638_260 Hb_001269_270--Hb_000617_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.076 4.49828 9.79883 16.7269 24.84 23.5963
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
58.0278 87.5924 31.6172 13.9828 7.50153

CAGE analysis