Hb_009851_110

Information

Type -
Description -
Location Contig9851: 100524-102975
Sequence    

Annotation

kegg
ID rcu:RCOM_1312180
description structural constituent of ribosome, putative
nr
ID XP_002518855.1
description structural constituent of ribosome, putative [Ricinus communis]
swissprot
ID Q8VY91
description 30S ribosomal protein S6 alpha, chloroplastic OS=Arabidopsis thaliana GN=RPS6 PE=2 SV=1
trembl
ID B9RYN6
description Structural constituent of ribosome, putative OS=Ricinus communis GN=RCOM_1312180 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 30s ribosomal protein s6 chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64643: 100674-102843
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009851_110 0.0 - - structural constituent of ribosome, putative [Ricinus communis]
2 Hb_004899_030 0.0911204298 - - PREDICTED: 20 kDa chaperonin, chloroplastic [Jatropha curcas]
3 Hb_004656_060 0.1008251451 - - PREDICTED: uncharacterized protein LOC105634581 [Jatropha curcas]
4 Hb_005895_040 0.1043430955 - - PREDICTED: tRNA threonylcarbamoyladenosine dehydratase [Jatropha curcas]
5 Hb_000422_140 0.1079017421 - - PREDICTED: apoptosis-inducing factor 2-like isoform X1 [Jatropha curcas]
6 Hb_004701_030 0.1080921315 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
7 Hb_003091_010 0.1179002842 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
8 Hb_000540_150 0.1199444501 - - PREDICTED: uncharacterized protein YKR070W [Jatropha curcas]
9 Hb_000175_390 0.1202067356 - - DNA-directed RNA polymerase III subunit F, putative [Ricinus communis]
10 Hb_004374_150 0.1208817742 - - PREDICTED: uncharacterized protein LOC105650290 isoform X1 [Jatropha curcas]
11 Hb_091384_010 0.1230977988 - - hypothetical protein JCGZ_09207 [Jatropha curcas]
12 Hb_000261_520 0.1259594107 - - PREDICTED: uncharacterized protein LOC105633192 [Jatropha curcas]
13 Hb_000088_200 0.1263756107 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
14 Hb_073171_080 0.1263841647 - - PREDICTED: MMS19 nucleotide excision repair protein homolog isoform X1 [Jatropha curcas]
15 Hb_188964_010 0.1271906684 - - maintenance of killer 16 (mak16) protein, putative [Ricinus communis]
16 Hb_009151_020 0.1278767392 - - PREDICTED: DNA polymerase delta catalytic subunit [Jatropha curcas]
17 Hb_028707_090 0.1299624748 - - PREDICTED: signal peptide peptidase-like 2 [Jatropha curcas]
18 Hb_000906_060 0.1306687236 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g08820 [Populus euphratica]
19 Hb_007380_080 0.1309002583 transcription factor TF Family: G2-like PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
20 Hb_000803_110 0.1318955797 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]

Gene co-expression network

sample Hb_009851_110 Hb_009851_110 Hb_004899_030 Hb_004899_030 Hb_009851_110--Hb_004899_030 Hb_004656_060 Hb_004656_060 Hb_009851_110--Hb_004656_060 Hb_005895_040 Hb_005895_040 Hb_009851_110--Hb_005895_040 Hb_000422_140 Hb_000422_140 Hb_009851_110--Hb_000422_140 Hb_004701_030 Hb_004701_030 Hb_009851_110--Hb_004701_030 Hb_003091_010 Hb_003091_010 Hb_009851_110--Hb_003091_010 Hb_028707_090 Hb_028707_090 Hb_004899_030--Hb_028707_090 Hb_002301_270 Hb_002301_270 Hb_004899_030--Hb_002301_270 Hb_004899_030--Hb_005895_040 Hb_001396_290 Hb_001396_290 Hb_004899_030--Hb_001396_290 Hb_001473_080 Hb_001473_080 Hb_004899_030--Hb_001473_080 Hb_004656_060--Hb_004701_030 Hb_004656_060--Hb_000422_140 Hb_004656_060--Hb_005895_040 Hb_023001_020 Hb_023001_020 Hb_004656_060--Hb_023001_020 Hb_000640_220 Hb_000640_220 Hb_004656_060--Hb_000640_220 Hb_002587_020 Hb_002587_020 Hb_004656_060--Hb_002587_020 Hb_005895_040--Hb_000422_140 Hb_009151_020 Hb_009151_020 Hb_005895_040--Hb_009151_020 Hb_002477_130 Hb_002477_130 Hb_005895_040--Hb_002477_130 Hb_005895_040--Hb_004701_030 Hb_002499_070 Hb_002499_070 Hb_005895_040--Hb_002499_070 Hb_144787_030 Hb_144787_030 Hb_000422_140--Hb_144787_030 Hb_000946_120 Hb_000946_120 Hb_000422_140--Hb_000946_120 Hb_000365_140 Hb_000365_140 Hb_000422_140--Hb_000365_140 Hb_000422_140--Hb_002477_130 Hb_004701_030--Hb_023001_020 Hb_004701_030--Hb_003091_010 Hb_004678_020 Hb_004678_020 Hb_004701_030--Hb_004678_020 Hb_000104_080 Hb_000104_080 Hb_004701_030--Hb_000104_080 Hb_000617_220 Hb_000617_220 Hb_003091_010--Hb_000617_220 Hb_011848_010 Hb_011848_010 Hb_003091_010--Hb_011848_010 Hb_000359_330 Hb_000359_330 Hb_003091_010--Hb_000359_330 Hb_004450_060 Hb_004450_060 Hb_003091_010--Hb_004450_060 Hb_001754_240 Hb_001754_240 Hb_003091_010--Hb_001754_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.32609 3.80564 4.59931 1.52195 13.7559 12.6832
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.77507 4.22632 2.00947 1.64733 2.94042

CAGE analysis