Hb_009897_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig9897: 1155-2783
Sequence    

Annotation

kegg
ID rcu:RCOM_0885080
description Disease resistance protein RPS5, putative
nr
ID XP_002522629.1
description Disease resistance protein RPS5, putative [Ricinus communis]
swissprot
ID O64973
description Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2
trembl
ID B9S9G0
description Disease resistance protein RPS5, putative OS=Ricinus communis GN=RCOM_0885080 PE=4 SV=1
Gene Ontology
ID GO:0000166
description probable disease resistance protein at4g27220

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64699: 1156-3625
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009897_010 0.0 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
2 Hb_003155_020 0.0936614606 - - Rpp4C3 [Medicago truncatula]
3 Hb_065500_030 0.112606903 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 [Jatropha curcas]
4 Hb_004162_120 0.1195490818 - - PREDICTED: vacuolar protein sorting-associated protein 41 homolog [Populus euphratica]
5 Hb_089100_040 0.1241312271 - - PREDICTED: uncharacterized protein LOC105638961 [Jatropha curcas]
6 Hb_011716_110 0.1293170503 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
7 Hb_000751_140 0.1328043633 - - PREDICTED: clathrin interactor EPSIN 2 [Jatropha curcas]
8 Hb_001369_770 0.1343335597 - - PREDICTED: AT-hook motif nuclear-localized protein 6-like [Jatropha curcas]
9 Hb_000107_560 0.1357496721 - - glutamate receptor 3 plant, putative [Ricinus communis]
10 Hb_000123_350 0.1413090847 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
11 Hb_000866_370 0.1421947551 - - synaptotagmin, putative [Ricinus communis]
12 Hb_000979_240 0.1427848093 transcription factor TF Family: GRAS PREDICTED: DELLA protein GAIP-B [Jatropha curcas]
13 Hb_002005_120 0.1525653462 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]
14 Hb_001561_010 0.1526224231 - - PREDICTED: uncharacterized protein LOC105635045 isoform X1 [Jatropha curcas]
15 Hb_000599_130 0.1532923555 - - PREDICTED: U-box domain-containing protein 3 [Jatropha curcas]
16 Hb_002774_150 0.1554720512 - - PREDICTED: F-box protein At1g22220 [Jatropha curcas]
17 Hb_001865_060 0.1561856123 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
18 Hb_002233_020 0.1567811529 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
19 Hb_080451_010 0.158340846 - - PREDICTED: ankyrin repeat-containing protein At2g01680 [Jatropha curcas]
20 Hb_000448_060 0.1591775051 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]

Gene co-expression network

sample Hb_009897_010 Hb_009897_010 Hb_003155_020 Hb_003155_020 Hb_009897_010--Hb_003155_020 Hb_065500_030 Hb_065500_030 Hb_009897_010--Hb_065500_030 Hb_004162_120 Hb_004162_120 Hb_009897_010--Hb_004162_120 Hb_089100_040 Hb_089100_040 Hb_009897_010--Hb_089100_040 Hb_011716_110 Hb_011716_110 Hb_009897_010--Hb_011716_110 Hb_000751_140 Hb_000751_140 Hb_009897_010--Hb_000751_140 Hb_000123_350 Hb_000123_350 Hb_003155_020--Hb_000123_350 Hb_005203_020 Hb_005203_020 Hb_003155_020--Hb_005203_020 Hb_001865_060 Hb_001865_060 Hb_003155_020--Hb_001865_060 Hb_003155_020--Hb_011716_110 Hb_001907_100 Hb_001907_100 Hb_003155_020--Hb_001907_100 Hb_002005_120 Hb_002005_120 Hb_065500_030--Hb_002005_120 Hb_011828_030 Hb_011828_030 Hb_065500_030--Hb_011828_030 Hb_065500_030--Hb_004162_120 Hb_000836_020 Hb_000836_020 Hb_065500_030--Hb_000836_020 Hb_000117_070 Hb_000117_070 Hb_065500_030--Hb_000117_070 Hb_000599_130 Hb_000599_130 Hb_065500_030--Hb_000599_130 Hb_004162_120--Hb_000751_140 Hb_000917_100 Hb_000917_100 Hb_004162_120--Hb_000917_100 Hb_000197_030 Hb_000197_030 Hb_004162_120--Hb_000197_030 Hb_080451_010 Hb_080451_010 Hb_004162_120--Hb_080451_010 Hb_004162_120--Hb_002005_120 Hb_000189_470 Hb_000189_470 Hb_089100_040--Hb_000189_470 Hb_000866_370 Hb_000866_370 Hb_089100_040--Hb_000866_370 Hb_000362_090 Hb_000362_090 Hb_089100_040--Hb_000362_090 Hb_000216_020 Hb_000216_020 Hb_089100_040--Hb_000216_020 Hb_089100_040--Hb_065500_030 Hb_011716_110--Hb_004162_120 Hb_011716_110--Hb_065500_030 Hb_001544_080 Hb_001544_080 Hb_011716_110--Hb_001544_080 Hb_011716_110--Hb_000599_130 Hb_011716_110--Hb_080451_010 Hb_044653_020 Hb_044653_020 Hb_000751_140--Hb_044653_020 Hb_003895_020 Hb_003895_020 Hb_000751_140--Hb_003895_020 Hb_003120_070 Hb_003120_070 Hb_000751_140--Hb_003120_070 Hb_000334_130 Hb_000334_130 Hb_000751_140--Hb_000334_130 Hb_000751_140--Hb_000117_070 Hb_000635_200 Hb_000635_200 Hb_000751_140--Hb_000635_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.12968 26.0772 3.06101 8.60003 4.59775 8.86646
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.13663 0.849539 1.93795 7.34527 5.53706

CAGE analysis