Hb_009911_030

Information

Type transcription factor
Description TF Family: FAR1
Location Contig9911: 45081-51259
Sequence    

Annotation

kegg
ID pop:POPTR_0006s02140g
description POPTRDRAFT_417079; hypothetical protein
nr
ID KHG16978.1
description far-red impaired response 1 -like protein [Gossypium arboreum]
swissprot
ID Q9SWG3
description Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana GN=FAR1 PE=1 SV=1
trembl
ID A0A0B0NR12
description Far-red impaired response 1-like protein OS=Gossypium arboreum GN=F383_01936 PE=4 SV=1
Gene Ontology
ID GO:0008270
description protein far-red impaired response 1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64777: 45133-50500 , PASA_asmbl_64778: 46941-51313
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009911_030 0.0 transcription factor TF Family: FAR1 far-red impaired response 1 -like protein [Gossypium arboreum]
2 Hb_001456_060 0.0488549292 - - hypothetical protein JCGZ_17090 [Jatropha curcas]
3 Hb_000339_040 0.0553606753 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
4 Hb_003428_010 0.0569754852 - - PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Jatropha curcas]
5 Hb_004052_080 0.057289458 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000172_430 0.059344826 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002876_230 0.0606667853 - - PREDICTED: uncharacterized protein LOC105633933 [Jatropha curcas]
8 Hb_001408_140 0.0654869016 - - hypothetical protein JCGZ_00234 [Jatropha curcas]
9 Hb_005867_070 0.0656997885 - - DNA binding protein, putative [Ricinus communis]
10 Hb_105105_010 0.0663068638 - - PREDICTED: coiled-coil domain-containing protein 132 [Jatropha curcas]
11 Hb_004837_180 0.0702638885 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
12 Hb_002400_340 0.0709049284 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
13 Hb_001226_150 0.0726076934 - - PREDICTED: serine/threonine-protein kinase 38-like isoform X3 [Jatropha curcas]
14 Hb_003849_110 0.0734734104 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
15 Hb_007007_120 0.073754066 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
16 Hb_004994_010 0.0747007049 - - PREDICTED: COP9 signalosome complex subunit 1 [Jatropha curcas]
17 Hb_000454_130 0.0771577431 transcription factor TF Family: BBR-BPC conserved hypothetical protein [Ricinus communis]
18 Hb_002205_250 0.0779329592 - - PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X1 [Jatropha curcas]
19 Hb_000390_230 0.0781517871 - - PREDICTED: transducin beta-like protein 3 [Jatropha curcas]
20 Hb_002013_020 0.0784689559 - - PREDICTED: uncharacterized protein LOC105641613 [Jatropha curcas]

Gene co-expression network

sample Hb_009911_030 Hb_009911_030 Hb_001456_060 Hb_001456_060 Hb_009911_030--Hb_001456_060 Hb_000339_040 Hb_000339_040 Hb_009911_030--Hb_000339_040 Hb_003428_010 Hb_003428_010 Hb_009911_030--Hb_003428_010 Hb_004052_080 Hb_004052_080 Hb_009911_030--Hb_004052_080 Hb_000172_430 Hb_000172_430 Hb_009911_030--Hb_000172_430 Hb_002876_230 Hb_002876_230 Hb_009911_030--Hb_002876_230 Hb_001456_060--Hb_000339_040 Hb_004994_010 Hb_004994_010 Hb_001456_060--Hb_004994_010 Hb_001456_060--Hb_004052_080 Hb_001456_060--Hb_002876_230 Hb_005867_070 Hb_005867_070 Hb_001456_060--Hb_005867_070 Hb_000339_040--Hb_004052_080 Hb_000339_040--Hb_002876_230 Hb_004837_180 Hb_004837_180 Hb_000339_040--Hb_004837_180 Hb_000339_040--Hb_005867_070 Hb_003428_010--Hb_004052_080 Hb_007007_120 Hb_007007_120 Hb_003428_010--Hb_007007_120 Hb_003849_110 Hb_003849_110 Hb_003428_010--Hb_003849_110 Hb_002849_130 Hb_002849_130 Hb_003428_010--Hb_002849_130 Hb_003861_060 Hb_003861_060 Hb_003428_010--Hb_003861_060 Hb_014834_150 Hb_014834_150 Hb_003428_010--Hb_014834_150 Hb_004052_080--Hb_007007_120 Hb_003513_010 Hb_003513_010 Hb_004052_080--Hb_003513_010 Hb_004052_080--Hb_002876_230 Hb_004052_080--Hb_003861_060 Hb_001247_250 Hb_001247_250 Hb_000172_430--Hb_001247_250 Hb_162275_050 Hb_162275_050 Hb_000172_430--Hb_162275_050 Hb_012779_090 Hb_012779_090 Hb_000172_430--Hb_012779_090 Hb_012194_030 Hb_012194_030 Hb_000172_430--Hb_012194_030 Hb_001838_060 Hb_001838_060 Hb_000172_430--Hb_001838_060 Hb_002876_230--Hb_007007_120 Hb_000331_110 Hb_000331_110 Hb_002876_230--Hb_000331_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.92085 9.23334 10.2206 6.27287 6.70384 8.10041
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.78236 9.08867 8.00237 8.0557 8.44731

CAGE analysis