Hb_009913_020

Information

Type -
Description -
Location Contig9913: 15895-28097
Sequence    

Annotation

kegg
ID rcu:RCOM_1411630
description hypothetical protein
nr
ID XP_002528614.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID A5YVF1
description Protein SUPPRESSOR OF GENE SILENCING 3 OS=Solanum lycopersicum GN=SGS3 PE=1 SV=1
trembl
ID B9SRJ5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1411630 PE=4 SV=1
Gene Ontology
ID GO:0008152
description protein suppressor of gene silencing 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64783: 15840-16138 , PASA_asmbl_64784: 26548-28092
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009913_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000005_320 0.2087715529 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000028_640 0.2152776378 - - Auxin efflux carrier component, putative [Ricinus communis]
4 Hb_005460_030 0.22337307 - - PREDICTED: RING-H2 finger protein ATL65 [Jatropha curcas]
5 Hb_006960_030 0.2429109822 transcription factor TF Family: MYB PREDICTED: transcription factor MYB44-like [Jatropha curcas]
6 Hb_000252_090 0.2450605763 - - PREDICTED: L-tryptophan--pyruvate aminotransferase 1 [Jatropha curcas]
7 Hb_003216_120 0.2453369137 - - PREDICTED: zinc finger CCCH domain-containing protein 18 isoform X2 [Jatropha curcas]
8 Hb_001277_410 0.2503526195 - - PREDICTED: uncharacterized protein LOC105632036 [Jatropha curcas]
9 Hb_003580_040 0.2549196477 - - PREDICTED: protein ENHANCED DOWNY MILDEW 2-like [Jatropha curcas]
10 Hb_009767_090 0.2571818678 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002783_020 0.2593338137 - - PREDICTED: synaptotagmin-2 isoform X4 [Jatropha curcas]
12 Hb_000181_310 0.2662389113 - - hypothetical protein JCGZ_20998 [Jatropha curcas]
13 Hb_001916_120 0.2669761392 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
14 Hb_001005_090 0.2673214858 - - PREDICTED: uncharacterized protein LOC105630219 [Jatropha curcas]
15 Hb_002159_030 0.2682119365 - - AP-1 complex subunit gamma-2, putative [Ricinus communis]
16 Hb_000161_100 0.2704000738 - - Transducin/WD40 repeat-like superfamily protein isoform 2 [Theobroma cacao]
17 Hb_002685_120 0.2734002043 - - conserved hypothetical protein [Ricinus communis]
18 Hb_061256_030 0.2739394977 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
19 Hb_001019_120 0.2747528698 - - PREDICTED: uncharacterized protein LOC105639315 [Jatropha curcas]
20 Hb_002739_080 0.2789389391 - - cystathionine beta-lyase, putative [Ricinus communis]

Gene co-expression network

sample Hb_009913_020 Hb_009913_020 Hb_000005_320 Hb_000005_320 Hb_009913_020--Hb_000005_320 Hb_000028_640 Hb_000028_640 Hb_009913_020--Hb_000028_640 Hb_005460_030 Hb_005460_030 Hb_009913_020--Hb_005460_030 Hb_006960_030 Hb_006960_030 Hb_009913_020--Hb_006960_030 Hb_000252_090 Hb_000252_090 Hb_009913_020--Hb_000252_090 Hb_003216_120 Hb_003216_120 Hb_009913_020--Hb_003216_120 Hb_003673_020 Hb_003673_020 Hb_000005_320--Hb_003673_020 Hb_000156_030 Hb_000156_030 Hb_000005_320--Hb_000156_030 Hb_000161_100 Hb_000161_100 Hb_000005_320--Hb_000161_100 Hb_061256_030 Hb_061256_030 Hb_000005_320--Hb_061256_030 Hb_003226_170 Hb_003226_170 Hb_000005_320--Hb_003226_170 Hb_002897_040 Hb_002897_040 Hb_000005_320--Hb_002897_040 Hb_000258_020 Hb_000258_020 Hb_000028_640--Hb_000258_020 Hb_000028_640--Hb_005460_030 Hb_002217_130 Hb_002217_130 Hb_000028_640--Hb_002217_130 Hb_000028_640--Hb_000161_100 Hb_001019_120 Hb_001019_120 Hb_000028_640--Hb_001019_120 Hb_004143_070 Hb_004143_070 Hb_005460_030--Hb_004143_070 Hb_000181_310 Hb_000181_310 Hb_005460_030--Hb_000181_310 Hb_002159_030 Hb_002159_030 Hb_005460_030--Hb_002159_030 Hb_030627_040 Hb_030627_040 Hb_005460_030--Hb_030627_040 Hb_004324_240 Hb_004324_240 Hb_005460_030--Hb_004324_240 Hb_005460_030--Hb_003216_120 Hb_006960_030--Hb_000005_320 Hb_008406_130 Hb_008406_130 Hb_006960_030--Hb_008406_130 Hb_006960_030--Hb_061256_030 Hb_006960_030--Hb_003673_020 Hb_101020_010 Hb_101020_010 Hb_006960_030--Hb_101020_010 Hb_006960_030--Hb_000252_090 Hb_001138_010 Hb_001138_010 Hb_000252_090--Hb_001138_010 Hb_001916_120 Hb_001916_120 Hb_000252_090--Hb_001916_120 Hb_000329_540 Hb_000329_540 Hb_000252_090--Hb_000329_540 Hb_000329_420 Hb_000329_420 Hb_000252_090--Hb_000329_420 Hb_000252_090--Hb_000156_030 Hb_000441_230 Hb_000441_230 Hb_000252_090--Hb_000441_230 Hb_004899_030 Hb_004899_030 Hb_003216_120--Hb_004899_030 Hb_000024_070 Hb_000024_070 Hb_003216_120--Hb_000024_070 Hb_000809_210 Hb_000809_210 Hb_003216_120--Hb_000809_210 Hb_028707_090 Hb_028707_090 Hb_003216_120--Hb_028707_090 Hb_000363_380 Hb_000363_380 Hb_003216_120--Hb_000363_380 Hb_008246_030 Hb_008246_030 Hb_003216_120--Hb_008246_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.3835 0.638772 7.34247 0.709536 15.4108 20.6714
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.34651 1.78273 0.517136 0.0217163 9.91226

CAGE analysis