Hb_009913_030

Information

Type transcription factor
Description TF Family: C2C2-GATA
Location Contig9913: 40764-41926
Sequence    

Annotation

kegg
ID tcc:TCM_006415
description GATA transcription factor 26-like protein
nr
ID KDP38897.1
description hypothetical protein JCGZ_05054 [Jatropha curcas]
swissprot
ID Q8W4H1
description GATA transcription factor 26 OS=Arabidopsis thaliana GN=GATA26 PE=2 SV=1
trembl
ID A0A067KRY9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05054 PE=4 SV=1
Gene Ontology
ID GO:0005488
description gata transcription factor 26-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009913_030 0.0 transcription factor TF Family: C2C2-GATA hypothetical protein JCGZ_05054 [Jatropha curcas]
2 Hb_025964_030 0.1557986631 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At1g55760 [Jatropha curcas]
3 Hb_164926_020 0.1649621923 - - PREDICTED: uncharacterized protein LOC105645601 [Jatropha curcas]
4 Hb_000922_170 0.1700372002 - - PREDICTED: uncharacterized protein LOC105640383 [Jatropha curcas]
5 Hb_004116_080 0.1744902746 - - ATATH9, putative [Ricinus communis]
6 Hb_000975_250 0.1795887755 - - PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like [Jatropha curcas]
7 Hb_000384_130 0.1826170301 - - uridylate kinase plant, putative [Ricinus communis]
8 Hb_000035_430 0.19070059 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2-like [Jatropha curcas]
9 Hb_000046_260 0.1959718902 - - acyl carrier protein, putative [Ricinus communis]
10 Hb_009659_010 0.2008362319 - - PREDICTED: mediator of RNA polymerase II transcription subunit 9 [Vitis vinifera]
11 Hb_144598_020 0.2010831226 - - PREDICTED: triphosphate tunel metalloenzyme 3 [Jatropha curcas]
12 Hb_001135_080 0.202758802 - - PREDICTED: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2-like [Jatropha curcas]
13 Hb_000641_040 0.2031009708 - - PREDICTED: condensin complex subunit 1 isoform X1 [Jatropha curcas]
14 Hb_121089_070 0.2052385775 - - PREDICTED: GDSL esterase/lipase At1g71691 [Jatropha curcas]
15 Hb_015807_140 0.2093823695 - - small heat-shock protein, putative [Ricinus communis]
16 Hb_000948_210 0.2095649237 - - PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial [Jatropha curcas]
17 Hb_000935_030 0.2119279063 - - Squalene monooxygenase, putative [Ricinus communis]
18 Hb_001687_040 0.2123995781 - - actin-depolymerizing factor [Hevea brasiliensis]
19 Hb_000191_020 0.2150084623 - - conserved hypothetical protein [Ricinus communis]
20 Hb_007140_020 0.2159323513 - - hypothetical protein CICLE_v10008419mg [Citrus clementina]

Gene co-expression network

sample Hb_009913_030 Hb_009913_030 Hb_025964_030 Hb_025964_030 Hb_009913_030--Hb_025964_030 Hb_164926_020 Hb_164926_020 Hb_009913_030--Hb_164926_020 Hb_000922_170 Hb_000922_170 Hb_009913_030--Hb_000922_170 Hb_004116_080 Hb_004116_080 Hb_009913_030--Hb_004116_080 Hb_000975_250 Hb_000975_250 Hb_009913_030--Hb_000975_250 Hb_000384_130 Hb_000384_130 Hb_009913_030--Hb_000384_130 Hb_000062_580 Hb_000062_580 Hb_025964_030--Hb_000062_580 Hb_003020_310 Hb_003020_310 Hb_025964_030--Hb_003020_310 Hb_001437_220 Hb_001437_220 Hb_025964_030--Hb_001437_220 Hb_001035_040 Hb_001035_040 Hb_025964_030--Hb_001035_040 Hb_007047_010 Hb_007047_010 Hb_025964_030--Hb_007047_010 Hb_025964_030--Hb_000922_170 Hb_164926_020--Hb_004116_080 Hb_164926_020--Hb_000384_130 Hb_009787_040 Hb_009787_040 Hb_164926_020--Hb_009787_040 Hb_000948_210 Hb_000948_210 Hb_164926_020--Hb_000948_210 Hb_164926_020--Hb_000922_170 Hb_000510_110 Hb_000510_110 Hb_164926_020--Hb_000510_110 Hb_000046_260 Hb_000046_260 Hb_000922_170--Hb_000046_260 Hb_000188_130 Hb_000188_130 Hb_000922_170--Hb_000188_130 Hb_001045_080 Hb_001045_080 Hb_000922_170--Hb_001045_080 Hb_000922_170--Hb_004116_080 Hb_000161_050 Hb_000161_050 Hb_000922_170--Hb_000161_050 Hb_007140_020 Hb_007140_020 Hb_000922_170--Hb_007140_020 Hb_000045_190 Hb_000045_190 Hb_004116_080--Hb_000045_190 Hb_004116_080--Hb_000046_260 Hb_003018_120 Hb_003018_120 Hb_004116_080--Hb_003018_120 Hb_000798_030 Hb_000798_030 Hb_004116_080--Hb_000798_030 Hb_000160_130 Hb_000160_130 Hb_004116_080--Hb_000160_130 Hb_004116_080--Hb_000188_130 Hb_001080_080 Hb_001080_080 Hb_000975_250--Hb_001080_080 Hb_003607_170 Hb_003607_170 Hb_000975_250--Hb_003607_170 Hb_126216_010 Hb_126216_010 Hb_000975_250--Hb_126216_010 Hb_000948_190 Hb_000948_190 Hb_000975_250--Hb_000948_190 Hb_000617_090 Hb_000617_090 Hb_000975_250--Hb_000617_090 Hb_144598_020 Hb_144598_020 Hb_000975_250--Hb_144598_020 Hb_000159_070 Hb_000159_070 Hb_000384_130--Hb_000159_070 Hb_000384_130--Hb_000046_260 Hb_000035_430 Hb_000035_430 Hb_000384_130--Hb_000035_430 Hb_000809_060 Hb_000809_060 Hb_000384_130--Hb_000809_060 Hb_076693_040 Hb_076693_040 Hb_000384_130--Hb_076693_040 Hb_000062_390 Hb_000062_390 Hb_000384_130--Hb_000062_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.44011 0.480489 1.38938 2.20175 0.0988519 3.25694
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.36313 9.7099 3.6715 0.25308 1.35671

CAGE analysis