Hb_009954_040

Information

Type -
Description -
Location Contig9954: 24404-32876
Sequence    

Annotation

kegg
ID pop:POPTR_0001s32470g
description POPTRDRAFT_815634; hypothetical protein
nr
ID XP_012074633.1
description PREDICTED: putative golgin subfamily A member 6-like protein 6 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KIA2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10318 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64824: 24404-32820
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009954_040 0.0 - - PREDICTED: putative golgin subfamily A member 6-like protein 6 [Jatropha curcas]
2 Hb_003020_230 0.055531771 - - DNA-directed RNA polymerase II subunit RPB7 [Glycine max]
3 Hb_000300_610 0.056530142 - - cytosolic copper/zinc superoxide dismutase [Hevea brasiliensis]
4 Hb_005997_010 0.0618872515 - - Dihydroorotate dehydrogenase (quinone) [Morus notabilis]
5 Hb_002685_190 0.0699467478 transcription factor TF Family: SET PREDICTED: probable zinc metalloprotease EGY1, chloroplastic [Jatropha curcas]
6 Hb_000061_320 0.0745821205 - - PREDICTED: uncharacterized protein LOC105640575 isoform X1 [Jatropha curcas]
7 Hb_000103_090 0.0754078787 - - PREDICTED: protein RDM1 [Jatropha curcas]
8 Hb_000371_080 0.075833738 - - ubiquitin-conjugating enzyme m, putative [Ricinus communis]
9 Hb_000613_140 0.0769526461 - - PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic [Jatropha curcas]
10 Hb_026527_030 0.077633291 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
11 Hb_032717_080 0.0781270399 - - gamma-soluble nsf attachment protein, putative [Ricinus communis]
12 Hb_004837_140 0.0820069519 - - hypothetical protein PRUPE_ppa012469mg [Prunus persica]
13 Hb_012338_010 0.0826453928 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000815_040 0.0829094877 transcription factor TF Family: M-type hypothetical protein JCGZ_15623 [Jatropha curcas]
15 Hb_002214_040 0.085732675 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
16 Hb_007254_040 0.0862350903 - - PREDICTED: protein MITOFERRINLIKE 1, chloroplastic [Jatropha curcas]
17 Hb_005398_030 0.0865537249 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase 1-like [Jatropha curcas]
18 Hb_000170_010 0.0869879314 - - o-methyltransferase, putative [Ricinus communis]
19 Hb_011310_190 0.0870045184 - - PREDICTED: uncharacterized protein LOC105637641 isoform X1 [Jatropha curcas]
20 Hb_006400_030 0.0876556741 - - hypothetical protein OsI_01237 [Oryza sativa Indica Group]

Gene co-expression network

sample Hb_009954_040 Hb_009954_040 Hb_003020_230 Hb_003020_230 Hb_009954_040--Hb_003020_230 Hb_000300_610 Hb_000300_610 Hb_009954_040--Hb_000300_610 Hb_005997_010 Hb_005997_010 Hb_009954_040--Hb_005997_010 Hb_002685_190 Hb_002685_190 Hb_009954_040--Hb_002685_190 Hb_000061_320 Hb_000061_320 Hb_009954_040--Hb_000061_320 Hb_000103_090 Hb_000103_090 Hb_009954_040--Hb_000103_090 Hb_003020_230--Hb_005997_010 Hb_000371_080 Hb_000371_080 Hb_003020_230--Hb_000371_080 Hb_000613_140 Hb_000613_140 Hb_003020_230--Hb_000613_140 Hb_000170_010 Hb_000170_010 Hb_003020_230--Hb_000170_010 Hb_001824_070 Hb_001824_070 Hb_003020_230--Hb_001824_070 Hb_012338_010 Hb_012338_010 Hb_000300_610--Hb_012338_010 Hb_000486_010 Hb_000486_010 Hb_000300_610--Hb_000486_010 Hb_000300_610--Hb_000061_320 Hb_000300_610--Hb_002685_190 Hb_001278_110 Hb_001278_110 Hb_000300_610--Hb_001278_110 Hb_004837_140 Hb_004837_140 Hb_005997_010--Hb_004837_140 Hb_000087_020 Hb_000087_020 Hb_005997_010--Hb_000087_020 Hb_005997_010--Hb_001824_070 Hb_005997_010--Hb_000371_080 Hb_003599_040 Hb_003599_040 Hb_002685_190--Hb_003599_040 Hb_004204_120 Hb_004204_120 Hb_002685_190--Hb_004204_120 Hb_002963_010 Hb_002963_010 Hb_002685_190--Hb_002963_010 Hb_000465_060 Hb_000465_060 Hb_002685_190--Hb_000465_060 Hb_002685_190--Hb_001278_110 Hb_000061_320--Hb_012338_010 Hb_003175_040 Hb_003175_040 Hb_000061_320--Hb_003175_040 Hb_000061_320--Hb_003020_230 Hb_026527_030 Hb_026527_030 Hb_000061_320--Hb_026527_030 Hb_002890_140 Hb_002890_140 Hb_000103_090--Hb_002890_140 Hb_033834_040 Hb_033834_040 Hb_000103_090--Hb_033834_040 Hb_032717_080 Hb_032717_080 Hb_000103_090--Hb_032717_080 Hb_004128_190 Hb_004128_190 Hb_000103_090--Hb_004128_190 Hb_002477_330 Hb_002477_330 Hb_000103_090--Hb_002477_330 Hb_000529_190 Hb_000529_190 Hb_000103_090--Hb_000529_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.2401 8.23639 8.95886 12.3315 24.0853 38.1856
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
52.622 45.3782 29.2856 22.5447 14.8269

CAGE analysis