Hb_009973_020

Information

Type -
Description -
Location Contig9973: 1605-5177
Sequence    

Annotation

kegg
ID bvg:104889111
description uncharacterized LOC104889111
nr
ID XP_010672557.1
description PREDICTED: uncharacterized protein LOC104889111 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID E2DN01
description Putative uncharacterized protein OS=Beta vulgaris PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009973_020 0.0 - - PREDICTED: uncharacterized protein LOC104889111 [Beta vulgaris subsp. vulgaris]
2 Hb_047661_010 0.1827087929 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
3 Hb_005989_010 0.1847976387 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
4 Hb_023323_010 0.1865821729 - - PREDICTED: uncharacterized protein LOC104901296 [Beta vulgaris subsp. vulgaris]
5 Hb_021068_010 0.2562984714 - - PREDICTED: MADS-box transcription factor 23-like isoform X1 [Jatropha curcas]
6 Hb_159555_010 0.2650397744 - - PREDICTED: uncharacterized protein LOC105795953 [Gossypium raimondii]
7 Hb_001678_020 0.2683425957 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
8 Hb_183574_010 0.2864354342 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
9 Hb_058884_010 0.2864542639 - - PREDICTED: barwin-like [Jatropha curcas]
10 Hb_001767_020 0.2865285857 - - PREDICTED: WAT1-related protein At1g68170-like, partial [Jatropha curcas]
11 Hb_001159_210 0.2881698183 - - PREDICTED: MATE efflux family protein DTX1 [Jatropha curcas]
12 Hb_004460_020 0.2970824619 - - chaperone protein DNAj, putative [Ricinus communis]
13 Hb_049483_010 0.2986856975 - - leucyl-tRNA synthetase, putative [Ricinus communis]
14 Hb_005081_040 0.2988094958 - - -
15 Hb_041774_010 0.3025796122 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
16 Hb_098466_010 0.3052827299 - - PREDICTED: uncharacterized protein LOC105640954 [Jatropha curcas]
17 Hb_010317_020 0.3054482086 - - PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Jatropha curcas]
18 Hb_002518_300 0.3073666865 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic [Jatropha curcas]
19 Hb_087340_010 0.3083906588 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001196_050 0.3131914887 - - -

Gene co-expression network

sample Hb_009973_020 Hb_009973_020 Hb_047661_010 Hb_047661_010 Hb_009973_020--Hb_047661_010 Hb_005989_010 Hb_005989_010 Hb_009973_020--Hb_005989_010 Hb_023323_010 Hb_023323_010 Hb_009973_020--Hb_023323_010 Hb_021068_010 Hb_021068_010 Hb_009973_020--Hb_021068_010 Hb_159555_010 Hb_159555_010 Hb_009973_020--Hb_159555_010 Hb_001678_020 Hb_001678_020 Hb_009973_020--Hb_001678_020 Hb_047661_010--Hb_005989_010 Hb_001159_210 Hb_001159_210 Hb_047661_010--Hb_001159_210 Hb_047661_010--Hb_023323_010 Hb_004460_020 Hb_004460_020 Hb_047661_010--Hb_004460_020 Hb_002374_560 Hb_002374_560 Hb_047661_010--Hb_002374_560 Hb_005989_010--Hb_023323_010 Hb_003529_220 Hb_003529_220 Hb_005989_010--Hb_003529_220 Hb_001899_010 Hb_001899_010 Hb_005989_010--Hb_001899_010 Hb_005989_010--Hb_001159_210 Hb_023323_010--Hb_001678_020 Hb_000322_110 Hb_000322_110 Hb_023323_010--Hb_000322_110 Hb_005656_060 Hb_005656_060 Hb_023323_010--Hb_005656_060 Hb_001019_120 Hb_001019_120 Hb_021068_010--Hb_001019_120 Hb_032920_100 Hb_032920_100 Hb_021068_010--Hb_032920_100 Hb_183574_010 Hb_183574_010 Hb_021068_010--Hb_183574_010 Hb_004361_020 Hb_004361_020 Hb_021068_010--Hb_004361_020 Hb_001709_130 Hb_001709_130 Hb_021068_010--Hb_001709_130 Hb_010317_020 Hb_010317_020 Hb_159555_010--Hb_010317_020 Hb_005081_040 Hb_005081_040 Hb_159555_010--Hb_005081_040 Hb_049483_010 Hb_049483_010 Hb_159555_010--Hb_049483_010 Hb_159555_010--Hb_023323_010 Hb_012181_010 Hb_012181_010 Hb_159555_010--Hb_012181_010 Hb_000101_160 Hb_000101_160 Hb_001678_020--Hb_000101_160 Hb_010620_010 Hb_010620_010 Hb_001678_020--Hb_010620_010 Hb_000103_360 Hb_000103_360 Hb_001678_020--Hb_000103_360 Hb_002233_090 Hb_002233_090 Hb_001678_020--Hb_002233_090 Hb_000384_040 Hb_000384_040 Hb_001678_020--Hb_000384_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.623323 0 0.0193719 0 3.11706 2.57822
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.564055 0.124171 0.805634

CAGE analysis