Hb_010020_010

Information

Type -
Description -
Location Contig10020: 7501-7971
Sequence    

Annotation

kegg
ID pxb:103927502
description 17.1 kDa class II heat shock protein-like
nr
ID AAD41409.1
description cytosolic class II low molecular weight heat shock protein [Prunus dulcis]
swissprot
ID P05477
description 17.9 kDa class II heat shock protein OS=Glycine max GN=HSP17.9-D PE=3 SV=1
trembl
ID Q9XGS6
description Cytosolic class II low molecular weight heat shock protein OS=Prunus dulcis GN=hsp17.5 PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010020_010 0.0 - - cytosolic class II low molecular weight heat shock protein [Prunus dulcis]
2 Hb_020094_020 0.1579277823 - - PREDICTED: 17.1 kDa class II heat shock protein-like [Pyrus x bretschneideri]
3 Hb_000062_110 0.1857301402 transcription factor TF Family: MYB hypothetical protein JCGZ_17894 [Jatropha curcas]
4 Hb_004296_010 0.214287269 - - PREDICTED: activator of 90 kDa heat shock protein ATPase homolog 1 [Jatropha curcas]
5 Hb_001369_370 0.2170718125 - - PREDICTED: 23.6 kDa heat shock protein, mitochondrial [Jatropha curcas]
6 Hb_010174_210 0.2178853536 - - PREDICTED: small heat shock protein, chloroplastic-like isoform X1 [Jatropha curcas]
7 Hb_010407_190 0.2214315334 - - phosphate transporter [Manihot esculenta]
8 Hb_000941_140 0.2222530353 - - PREDICTED: activator of 90 kDa heat shock protein ATPase homolog 1 [Jatropha curcas]
9 Hb_078106_010 0.2236584021 - - seed maturation protein PM37 [Populus trichocarpa]
10 Hb_000264_230 0.2244877808 - - PREDICTED: uncharacterized protein LOC105649528 [Jatropha curcas]
11 Hb_006618_040 0.2258519014 - - PREDICTED: hsp70-Hsp90 organizing protein 3-like [Jatropha curcas]
12 Hb_001235_100 0.2278638746 - - heat-shock protein, putative [Ricinus communis]
13 Hb_006573_010 0.2339927771 - - heat shock protein [Hevea brasiliensis]
14 Hb_000329_100 0.2340951007 - - PREDICTED: uncharacterized protein LOC105643144 [Jatropha curcas]
15 Hb_005736_050 0.2350607014 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Jatropha curcas]
16 Hb_023001_070 0.2350873654 - - PREDICTED: dnaJ protein ERDJ3A-like [Eucalyptus grandis]
17 Hb_011164_010 0.2399386758 - - cytosolic class II low molecular weight heat shock protein [Prunus dulcis]
18 Hb_000302_300 0.2412239124 - - PREDICTED: heat shock protein 83 [Populus euphratica]
19 Hb_001232_100 0.2438601674 - - Heat shock 70 kDa protein, putative [Ricinus communis]
20 Hb_007257_010 0.2445614813 - - cytosolic class II low molecular weight heat shock protein [Prunus dulcis]

Gene co-expression network

sample Hb_010020_010 Hb_010020_010 Hb_020094_020 Hb_020094_020 Hb_010020_010--Hb_020094_020 Hb_000062_110 Hb_000062_110 Hb_010020_010--Hb_000062_110 Hb_004296_010 Hb_004296_010 Hb_010020_010--Hb_004296_010 Hb_001369_370 Hb_001369_370 Hb_010020_010--Hb_001369_370 Hb_010174_210 Hb_010174_210 Hb_010020_010--Hb_010174_210 Hb_010407_190 Hb_010407_190 Hb_010020_010--Hb_010407_190 Hb_001235_100 Hb_001235_100 Hb_020094_020--Hb_001235_100 Hb_002843_220 Hb_002843_220 Hb_020094_020--Hb_002843_220 Hb_020094_020--Hb_000062_110 Hb_020094_020--Hb_004296_010 Hb_000302_300 Hb_000302_300 Hb_020094_020--Hb_000302_300 Hb_001766_040 Hb_001766_040 Hb_000062_110--Hb_001766_040 Hb_000941_140 Hb_000941_140 Hb_000062_110--Hb_000941_140 Hb_006618_040 Hb_006618_040 Hb_000062_110--Hb_006618_040 Hb_000062_110--Hb_001369_370 Hb_011344_020 Hb_011344_020 Hb_000062_110--Hb_011344_020 Hb_019516_030 Hb_019516_030 Hb_000062_110--Hb_019516_030 Hb_004296_010--Hb_000941_140 Hb_004296_010--Hb_006618_040 Hb_000260_370 Hb_000260_370 Hb_004296_010--Hb_000260_370 Hb_001269_310 Hb_001269_310 Hb_004296_010--Hb_001269_310 Hb_002999_060 Hb_002999_060 Hb_004296_010--Hb_002999_060 Hb_013394_060 Hb_013394_060 Hb_004296_010--Hb_013394_060 Hb_001369_370--Hb_019516_030 Hb_011004_020 Hb_011004_020 Hb_001369_370--Hb_011004_020 Hb_001369_370--Hb_000941_140 Hb_001369_370--Hb_001235_100 Hb_000454_190 Hb_000454_190 Hb_001369_370--Hb_000454_190 Hb_010174_210--Hb_000941_140 Hb_020156_060 Hb_020156_060 Hb_010174_210--Hb_020156_060 Hb_010174_210--Hb_004296_010 Hb_008147_050 Hb_008147_050 Hb_010174_210--Hb_008147_050 Hb_010174_210--Hb_000062_110 Hb_007257_010 Hb_007257_010 Hb_010407_190--Hb_007257_010 Hb_010407_190--Hb_000062_110 Hb_010407_190--Hb_001766_040 Hb_000329_100 Hb_000329_100 Hb_010407_190--Hb_000329_100 Hb_000031_170 Hb_000031_170 Hb_010407_190--Hb_000031_170 Hb_000011_210 Hb_000011_210 Hb_010407_190--Hb_000011_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
76.7712 447.62 113.69 248.392 584.742 126.431
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
91.22 166.381 24.3551 12.3781 436.634

CAGE analysis