Hb_010021_040

Information

Type -
Description -
Location Contig10021: 48602-50406
Sequence    

Annotation

kegg
ID rcu:RCOM_1586480
description hypothetical protein
nr
ID XP_012068174.1
description PREDICTED: uncharacterized protein LOC105630811 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KZH5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15994 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00260: 49202-49690 , PASA_asmbl_00261: 49719-50018
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010021_040 0.0 - - PREDICTED: uncharacterized protein LOC105630811 [Jatropha curcas]
2 Hb_008864_050 0.06214056 - - protein binding protein, putative [Ricinus communis]
3 Hb_001775_010 0.063652065 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000768_080 0.0713867285 - - Mlo protein [Hevea brasiliensis]
5 Hb_004920_080 0.0742527261 - - PREDICTED: calvin cycle protein CP12-2, chloroplastic-like [Jatropha curcas]
6 Hb_018202_040 0.0801935502 - - PREDICTED: phosphoenolpyruvate/phosphate translocator 2, chloroplastic-like [Jatropha curcas]
7 Hb_005194_050 0.0836629981 transcription factor TF Family: GRAS SCL domain class transcription factor [Theobroma cacao]
8 Hb_000983_200 0.0927569761 - - PREDICTED: uncharacterized protein LOC105633924 [Jatropha curcas]
9 Hb_169492_010 0.0929253201 - - PREDICTED: expansin-like B1 [Jatropha curcas]
10 Hb_001080_290 0.0968725497 - - PSI reaction center subunit II [Citrus sinensis]
11 Hb_002413_050 0.0978266885 - - hypothetical protein POPTR_0018s06150g [Populus trichocarpa]
12 Hb_000629_110 0.0981013939 - - PREDICTED: protein RTF2 homolog [Jatropha curcas]
13 Hb_001951_050 0.100176644 - - chlorophyll A/B binding protein, putative [Ricinus communis]
14 Hb_011537_130 0.1005202448 - - unnamed protein product [Vitis vinifera]
15 Hb_003732_030 0.1035684271 - - gibberellin 20-oxidase, putative [Ricinus communis]
16 Hb_000776_120 0.1046204641 - - PREDICTED: cytochrome P450 78A5 [Jatropha curcas]
17 Hb_000029_390 0.1049313019 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
18 Hb_001053_050 0.1050754374 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Vitis vinifera]
19 Hb_001146_030 0.1098094188 - - cytochrome P450, putative [Ricinus communis]
20 Hb_001295_080 0.1100024682 - - Protein KES1, putative [Ricinus communis]

Gene co-expression network

sample Hb_010021_040 Hb_010021_040 Hb_008864_050 Hb_008864_050 Hb_010021_040--Hb_008864_050 Hb_001775_010 Hb_001775_010 Hb_010021_040--Hb_001775_010 Hb_000768_080 Hb_000768_080 Hb_010021_040--Hb_000768_080 Hb_004920_080 Hb_004920_080 Hb_010021_040--Hb_004920_080 Hb_018202_040 Hb_018202_040 Hb_010021_040--Hb_018202_040 Hb_005194_050 Hb_005194_050 Hb_010021_040--Hb_005194_050 Hb_008864_050--Hb_001775_010 Hb_008864_050--Hb_000768_080 Hb_003732_030 Hb_003732_030 Hb_008864_050--Hb_003732_030 Hb_000776_120 Hb_000776_120 Hb_008864_050--Hb_000776_120 Hb_008864_050--Hb_004920_080 Hb_001775_010--Hb_000768_080 Hb_001080_290 Hb_001080_290 Hb_001775_010--Hb_001080_290 Hb_002600_110 Hb_002600_110 Hb_001775_010--Hb_002600_110 Hb_001951_050 Hb_001951_050 Hb_001775_010--Hb_001951_050 Hb_000768_080--Hb_002600_110 Hb_000768_080--Hb_001080_290 Hb_002445_020 Hb_002445_020 Hb_000768_080--Hb_002445_020 Hb_000029_390 Hb_000029_390 Hb_004920_080--Hb_000029_390 Hb_002995_060 Hb_002995_060 Hb_004920_080--Hb_002995_060 Hb_000629_110 Hb_000629_110 Hb_004920_080--Hb_000629_110 Hb_004712_230 Hb_004712_230 Hb_004920_080--Hb_004712_230 Hb_005736_030 Hb_005736_030 Hb_004920_080--Hb_005736_030 Hb_011537_130 Hb_011537_130 Hb_018202_040--Hb_011537_130 Hb_005675_030 Hb_005675_030 Hb_018202_040--Hb_005675_030 Hb_169492_010 Hb_169492_010 Hb_018202_040--Hb_169492_010 Hb_002413_050 Hb_002413_050 Hb_018202_040--Hb_002413_050 Hb_000883_080 Hb_000883_080 Hb_018202_040--Hb_000883_080 Hb_005194_050--Hb_000776_120 Hb_005194_050--Hb_008864_050 Hb_002010_010 Hb_002010_010 Hb_005194_050--Hb_002010_010 Hb_005194_050--Hb_003732_030 Hb_161881_010 Hb_161881_010 Hb_005194_050--Hb_161881_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0251928 2.33855 6.26007 8.1564 0.0117954 0.0470143
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.022561 0 0.242911 55.3873

CAGE analysis