Hb_010029_020

Information

Type -
Description -
Location Contig10029: 9415-17562
Sequence    

Annotation

kegg
ID rcu:RCOM_1039720
description map3k delta-1 protein kinase, putative (EC:2.7.11.25)
nr
ID XP_012068034.1
description PREDICTED: serine/threonine-protein kinase CTR1 [Jatropha curcas]
swissprot
ID Q05609
description Serine/threonine-protein kinase CTR1 OS=Arabidopsis thaliana GN=CTR1 PE=1 SV=1
trembl
ID A0A067L2M1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15900 PE=3 SV=1
Gene Ontology
ID GO:0005622
description serine threonine-protein kinase ctr1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00271: 9468-15828 , PASA_asmbl_00272: 12527-12903 , PASA_asmbl_00273: 16711-17283
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010029_020 0.0 - - PREDICTED: serine/threonine-protein kinase CTR1 [Jatropha curcas]
2 Hb_008864_090 0.1229629274 - - PREDICTED: plastid division protein PDV2-like [Jatropha curcas]
3 Hb_001427_070 0.1261636386 - - PREDICTED: xaa-Pro dipeptidase [Jatropha curcas]
4 Hb_134469_010 0.1441692727 - - PREDICTED: protein argonaute 5 isoform X1 [Jatropha curcas]
5 Hb_001004_110 0.1492956534 - - conserved hypothetical protein [Ricinus communis]
6 Hb_007904_130 0.1575178898 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
7 Hb_010021_010 0.1580470185 - - unnamed protein product [Coffea canephora]
8 Hb_002631_200 0.1593240937 - - PREDICTED: uncharacterized protein LOC105646171 isoform X2 [Jatropha curcas]
9 Hb_001172_140 0.1596326714 - - hypothetical protein POPTR_0014s17790g [Populus trichocarpa]
10 Hb_000140_480 0.1599859095 - - PREDICTED: uncharacterized protein LOC105637350 [Jatropha curcas]
11 Hb_001232_010 0.1600278264 - - PREDICTED: uncharacterized protein LOC105634976 [Jatropha curcas]
12 Hb_002110_030 0.1613260621 - - PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]
13 Hb_000152_660 0.1618874862 - - PREDICTED: BAG family molecular chaperone regulator 7 [Jatropha curcas]
14 Hb_000402_190 0.1618978021 - - PREDICTED: F-box protein At1g70590 [Jatropha curcas]
15 Hb_001006_340 0.1625758374 - - PREDICTED: sodium/hydrogen exchanger 7-like [Malus domestica]
16 Hb_003090_100 0.1632385639 - - PREDICTED: uncharacterized protein LOC105646670 [Jatropha curcas]
17 Hb_028811_010 0.1640376524 - - PREDICTED: uncharacterized protein LOC105650178 isoform X1 [Jatropha curcas]
18 Hb_002005_090 0.1644924544 - - conserved hypothetical protein [Ricinus communis]
19 Hb_073562_010 0.1652032705 - - hypothetical protein POPTR_0011s036602g, partial [Populus trichocarpa]
20 Hb_001021_080 0.1652216974 - - PREDICTED: autophagy-related protein 18a [Jatropha curcas]

Gene co-expression network

sample Hb_010029_020 Hb_010029_020 Hb_008864_090 Hb_008864_090 Hb_010029_020--Hb_008864_090 Hb_001427_070 Hb_001427_070 Hb_010029_020--Hb_001427_070 Hb_134469_010 Hb_134469_010 Hb_010029_020--Hb_134469_010 Hb_001004_110 Hb_001004_110 Hb_010029_020--Hb_001004_110 Hb_007904_130 Hb_007904_130 Hb_010029_020--Hb_007904_130 Hb_010021_010 Hb_010021_010 Hb_010029_020--Hb_010021_010 Hb_119494_010 Hb_119494_010 Hb_008864_090--Hb_119494_010 Hb_008864_090--Hb_001427_070 Hb_077562_030 Hb_077562_030 Hb_008864_090--Hb_077562_030 Hb_008147_070 Hb_008147_070 Hb_008864_090--Hb_008147_070 Hb_014894_010 Hb_014894_010 Hb_008864_090--Hb_014894_010 Hb_000140_480 Hb_000140_480 Hb_001427_070--Hb_000140_480 Hb_001761_130 Hb_001761_130 Hb_001427_070--Hb_001761_130 Hb_000152_660 Hb_000152_660 Hb_001427_070--Hb_000152_660 Hb_006831_040 Hb_006831_040 Hb_001427_070--Hb_006831_040 Hb_002391_210 Hb_002391_210 Hb_001427_070--Hb_002391_210 Hb_002110_030 Hb_002110_030 Hb_001427_070--Hb_002110_030 Hb_134469_010--Hb_001427_070 Hb_000733_210 Hb_000733_210 Hb_134469_010--Hb_000733_210 Hb_009701_010 Hb_009701_010 Hb_134469_010--Hb_009701_010 Hb_007590_070 Hb_007590_070 Hb_134469_010--Hb_007590_070 Hb_011311_020 Hb_011311_020 Hb_134469_010--Hb_011311_020 Hb_134469_010--Hb_000140_480 Hb_004328_040 Hb_004328_040 Hb_001004_110--Hb_004328_040 Hb_010407_170 Hb_010407_170 Hb_001004_110--Hb_010407_170 Hb_004705_140 Hb_004705_140 Hb_001004_110--Hb_004705_140 Hb_000676_190 Hb_000676_190 Hb_001004_110--Hb_000676_190 Hb_001004_110--Hb_134469_010 Hb_000402_190 Hb_000402_190 Hb_007904_130--Hb_000402_190 Hb_010863_010 Hb_010863_010 Hb_007904_130--Hb_010863_010 Hb_001642_070 Hb_001642_070 Hb_007904_130--Hb_001642_070 Hb_003544_030 Hb_003544_030 Hb_007904_130--Hb_003544_030 Hb_002153_030 Hb_002153_030 Hb_007904_130--Hb_002153_030 Hb_001170_030 Hb_001170_030 Hb_007904_130--Hb_001170_030 Hb_000106_120 Hb_000106_120 Hb_010021_010--Hb_000106_120 Hb_002005_080 Hb_002005_080 Hb_010021_010--Hb_002005_080 Hb_001232_010 Hb_001232_010 Hb_010021_010--Hb_001232_010 Hb_015026_110 Hb_015026_110 Hb_010021_010--Hb_015026_110 Hb_002477_090 Hb_002477_090 Hb_010021_010--Hb_002477_090 Hb_005048_100 Hb_005048_100 Hb_010021_010--Hb_005048_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.09906 13.1539 5.79116 4.83052 7.22679 5.19395
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.31635 4.55853 12.1334 27.5106 4.3813

CAGE analysis