Hb_010042_010

Information

Type -
Description -
Location Contig10042: 11613-29128
Sequence    

Annotation

kegg
ID rcu:RCOM_0061320
description Urease accessory protein ureD, putative
nr
ID XP_002533423.1
description Urease accessory protein ureD, putative [Ricinus communis]
swissprot
ID Q7Y0S0
description Urease accessory protein D OS=Arabidopsis thaliana GN=URED PE=2 SV=1
trembl
ID B9T5A4
description Urease accessory protein ureD, putative OS=Ricinus communis GN=RCOM_0061320 PE=3 SV=1
Gene Ontology
ID GO:0016151
description urease accessory protein d

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00303: 11728-29275
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010042_010 0.0 - - Urease accessory protein ureD, putative [Ricinus communis]
2 Hb_015807_040 0.0585210459 - - PREDICTED: polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Jatropha curcas]
3 Hb_000331_450 0.0627338927 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
4 Hb_001461_010 0.0693456868 - - PREDICTED: trafficking protein particle complex subunit 5 [Pyrus x bretschneideri]
5 Hb_065525_020 0.0714121857 - - PREDICTED: geranylgeranyl transferase type-1 subunit beta [Jatropha curcas]
6 Hb_000934_250 0.0776089302 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
7 Hb_008544_010 0.0778536445 transcription factor TF Family: C2C2-LSD PREDICTED: protein LSD1 isoform X1 [Jatropha curcas]
8 Hb_001833_110 0.0787618703 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001584_190 0.0794984262 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
10 Hb_033594_150 0.0805474216 - - unknown [Lotus japonicus]
11 Hb_158467_010 0.0806113409 - - transporter, putative [Ricinus communis]
12 Hb_012053_070 0.0806181682 - - PREDICTED: uncharacterized protein LOC105637344 [Jatropha curcas]
13 Hb_001318_250 0.0836115469 - - PREDICTED: uncharacterized protein LOC105642666 [Jatropha curcas]
14 Hb_002830_020 0.0839831388 - - PREDICTED: outer envelope pore protein 16-3, chloroplastic/mitochondrial [Jatropha curcas]
15 Hb_001016_030 0.0839898694 - - PREDICTED: uncharacterized protein LOC105636529 isoform X2 [Jatropha curcas]
16 Hb_000102_020 0.0847455925 - - hypothetical protein JCGZ_11933 [Jatropha curcas]
17 Hb_004374_140 0.084912958 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
18 Hb_017413_010 0.0852720415 - - -
19 Hb_004668_020 0.0861099323 - - PREDICTED: uncharacterized protein LOC105630444 isoform X2 [Jatropha curcas]
20 Hb_152784_010 0.0861605779 - - hypothetical protein PRUPE_ppa010913mg [Prunus persica]

Gene co-expression network

sample Hb_010042_010 Hb_010042_010 Hb_015807_040 Hb_015807_040 Hb_010042_010--Hb_015807_040 Hb_000331_450 Hb_000331_450 Hb_010042_010--Hb_000331_450 Hb_001461_010 Hb_001461_010 Hb_010042_010--Hb_001461_010 Hb_065525_020 Hb_065525_020 Hb_010042_010--Hb_065525_020 Hb_000934_250 Hb_000934_250 Hb_010042_010--Hb_000934_250 Hb_008544_010 Hb_008544_010 Hb_010042_010--Hb_008544_010 Hb_015807_040--Hb_000331_450 Hb_006816_210 Hb_006816_210 Hb_015807_040--Hb_006816_210 Hb_001833_110 Hb_001833_110 Hb_015807_040--Hb_001833_110 Hb_159809_020 Hb_159809_020 Hb_015807_040--Hb_159809_020 Hb_001832_010 Hb_001832_010 Hb_015807_040--Hb_001832_010 Hb_012053_070 Hb_012053_070 Hb_000331_450--Hb_012053_070 Hb_001369_690 Hb_001369_690 Hb_000331_450--Hb_001369_690 Hb_017413_010 Hb_017413_010 Hb_000331_450--Hb_017413_010 Hb_003125_010 Hb_003125_010 Hb_000331_450--Hb_003125_010 Hb_004374_140 Hb_004374_140 Hb_001461_010--Hb_004374_140 Hb_001461_010--Hb_008544_010 Hb_001842_040 Hb_001842_040 Hb_001461_010--Hb_001842_040 Hb_002631_020 Hb_002631_020 Hb_001461_010--Hb_002631_020 Hb_000985_060 Hb_000985_060 Hb_001461_010--Hb_000985_060 Hb_009773_020 Hb_009773_020 Hb_065525_020--Hb_009773_020 Hb_002030_040 Hb_002030_040 Hb_065525_020--Hb_002030_040 Hb_158467_010 Hb_158467_010 Hb_065525_020--Hb_158467_010 Hb_065525_020--Hb_000934_250 Hb_001105_070 Hb_001105_070 Hb_065525_020--Hb_001105_070 Hb_001318_250 Hb_001318_250 Hb_000934_250--Hb_001318_250 Hb_003126_090 Hb_003126_090 Hb_000934_250--Hb_003126_090 Hb_003581_150 Hb_003581_150 Hb_000934_250--Hb_003581_150 Hb_152784_010 Hb_152784_010 Hb_000934_250--Hb_152784_010 Hb_008544_010--Hb_004374_140 Hb_000172_030 Hb_000172_030 Hb_008544_010--Hb_000172_030 Hb_004336_050 Hb_004336_050 Hb_008544_010--Hb_004336_050 Hb_001191_090 Hb_001191_090 Hb_008544_010--Hb_001191_090 Hb_000046_290 Hb_000046_290 Hb_008544_010--Hb_000046_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.19242 2.52561 4.71797 9.45313 7.36281 10.1884
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.0811 16.0348 12.8538 5.64409 3.82255

CAGE analysis