Hb_010050_020

Information

Type -
Description -
Location Contig10050: 11253-32581
Sequence    

Annotation

kegg
ID fve:101306742
description uncharacterized protein LOC101306742
nr
ID XP_006361907.1
description PREDICTED: uncharacterized protein LOC102601222 [Solanum tuberosum]
swissprot
ID Q3ECP7
description Sugar transporter ERD6-like 5 OS=Arabidopsis thaliana GN=At1g54730 PE=2 SV=2
trembl
ID A0A0D9VU96
description Uncharacterized protein OS=Leersia perrieri PE=4 SV=1
Gene Ontology
ID GO:0016021
description sugar transporter erd6-like 5 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00352: 9235-11493 , PASA_asmbl_00353: 10388-11493 , PASA_asmbl_00354: 17701-22326 , PASA_asmbl_00355: 20902-21458 , PASA_asmbl_00356: 21484-22041 , PASA_asmbl_00357: 18748-28028
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010050_020 0.0 - - PREDICTED: uncharacterized protein LOC102601222 [Solanum tuberosum]
2 Hb_012760_090 0.0834425122 - - Aspartic proteinase-like protein 1 [Morus notabilis]
3 Hb_001221_390 0.0901726457 - - Phospholipase C 4 precursor, putative [Ricinus communis]
4 Hb_000622_330 0.0932532024 - - PREDICTED: uncharacterized protein LOC105642906 [Jatropha curcas]
5 Hb_002641_160 0.0935813315 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004522_030 0.0995613776 - - PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating 3 [Jatropha curcas]
7 Hb_000012_400 0.1001850942 - - PREDICTED: K(+) efflux antiporter 6 [Jatropha curcas]
8 Hb_000309_030 0.1020409897 - - PREDICTED: formate dehydrogenase, mitochondrial [Jatropha curcas]
9 Hb_006120_060 0.1034963983 - - O-acetyltransferase family protein isoform 1 [Theobroma cacao]
10 Hb_034507_060 0.109549139 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic-like [Citrus sinensis]
11 Hb_000283_140 0.1102076363 - - PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
12 Hb_004218_130 0.1104907956 - - PREDICTED: uridine 5'-monophosphate synthase [Jatropha curcas]
13 Hb_001545_130 0.1110725707 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
14 Hb_010407_030 0.1116723175 - - PREDICTED: casein kinase I-like [Jatropha curcas]
15 Hb_012807_150 0.1140134195 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
16 Hb_000638_060 0.1171075208 - - PREDICTED: probable methyltransferase PMT26 [Jatropha curcas]
17 Hb_027380_150 0.1194356387 - - conserved hypothetical protein [Ricinus communis]
18 Hb_006949_060 0.1204210268 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
19 Hb_000928_120 0.1205463271 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
20 Hb_003430_080 0.1211521891 - - zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_010050_020 Hb_010050_020 Hb_012760_090 Hb_012760_090 Hb_010050_020--Hb_012760_090 Hb_001221_390 Hb_001221_390 Hb_010050_020--Hb_001221_390 Hb_000622_330 Hb_000622_330 Hb_010050_020--Hb_000622_330 Hb_002641_160 Hb_002641_160 Hb_010050_020--Hb_002641_160 Hb_004522_030 Hb_004522_030 Hb_010050_020--Hb_004522_030 Hb_000012_400 Hb_000012_400 Hb_010050_020--Hb_000012_400 Hb_012760_090--Hb_002641_160 Hb_005333_080 Hb_005333_080 Hb_012760_090--Hb_005333_080 Hb_034507_060 Hb_034507_060 Hb_012760_090--Hb_034507_060 Hb_004218_130 Hb_004218_130 Hb_012760_090--Hb_004218_130 Hb_000318_170 Hb_000318_170 Hb_012760_090--Hb_000318_170 Hb_005724_040 Hb_005724_040 Hb_001221_390--Hb_005724_040 Hb_001221_390--Hb_000318_170 Hb_000085_380 Hb_000085_380 Hb_001221_390--Hb_000085_380 Hb_000791_050 Hb_000791_050 Hb_001221_390--Hb_000791_050 Hb_001221_390--Hb_012760_090 Hb_000928_120 Hb_000928_120 Hb_000622_330--Hb_000928_120 Hb_006120_060 Hb_006120_060 Hb_000622_330--Hb_006120_060 Hb_002217_080 Hb_002217_080 Hb_000622_330--Hb_002217_080 Hb_000000_480 Hb_000000_480 Hb_000622_330--Hb_000000_480 Hb_000622_330--Hb_004522_030 Hb_002641_160--Hb_004218_130 Hb_001545_130 Hb_001545_130 Hb_002641_160--Hb_001545_130 Hb_000309_030 Hb_000309_030 Hb_002641_160--Hb_000309_030 Hb_002641_160--Hb_000000_480 Hb_004522_030--Hb_000928_120 Hb_007537_030 Hb_007537_030 Hb_004522_030--Hb_007537_030 Hb_003001_130 Hb_003001_130 Hb_004522_030--Hb_003001_130 Hb_004522_030--Hb_034507_060 Hb_003849_120 Hb_003849_120 Hb_000012_400--Hb_003849_120 Hb_010407_030 Hb_010407_030 Hb_000012_400--Hb_010407_030 Hb_000562_100 Hb_000562_100 Hb_000012_400--Hb_000562_100 Hb_001195_310 Hb_001195_310 Hb_000012_400--Hb_001195_310 Hb_001009_150 Hb_001009_150 Hb_000012_400--Hb_001009_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.449838 1.6798 2.65398 4.35094 0.391902 0.334324
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.420692 0.207885 0.236871 1.76804 2.24675

CAGE analysis