Hb_010050_040

Information

Type -
Description -
Location Contig10050: 46231-46914
Sequence    

Annotation

kegg
ID rcu:RCOM_1430130
description hypothetical protein
nr
ID XP_012089128.1
description PREDICTED: protein FANTASTIC FOUR 1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RF07
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1430130 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010050_040 0.0 - - PREDICTED: protein FANTASTIC FOUR 1 [Jatropha curcas]
2 Hb_000179_060 0.1604966363 - - hypothetical protein POPTR_0010s23130g, partial [Populus trichocarpa]
3 Hb_129230_010 0.1647474093 - - PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 1-like [Nicotiana sylvestris]
4 Hb_002785_010 0.1837230531 transcription factor TF Family: MYB PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
5 Hb_000752_040 0.1859478211 - - PREDICTED: uncharacterized protein LOC104884990 [Beta vulgaris subsp. vulgaris]
6 Hb_005725_160 0.1867566294 - - PREDICTED: uncharacterized protein LOC105630811 [Jatropha curcas]
7 Hb_003008_020 0.188114492 - - auxin-responsive family protein [Populus trichocarpa]
8 Hb_007666_010 0.1891941053 - - PREDICTED: uncharacterized protein LOC105649266 [Jatropha curcas]
9 Hb_003050_330 0.1923851419 - - hypothetical protein JCGZ_04591 [Jatropha curcas]
10 Hb_001232_040 0.1957231434 - - PREDICTED: uncharacterized protein LOC105634974 [Jatropha curcas]
11 Hb_002193_080 0.1959654883 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
12 Hb_032202_010 0.1971275526 - - PREDICTED: subtilisin-like protease SBT1.1 [Jatropha curcas]
13 Hb_000201_010 0.2017570045 - - unnamed protein product [Vitis vinifera]
14 Hb_008689_010 0.2027316978 - - hypothetical protein POPTR_0006s25330g [Populus trichocarpa]
15 Hb_003494_150 0.2035392976 - - Silicon transporter, putative [Ricinus communis]
16 Hb_077774_010 0.2050233913 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
17 Hb_005790_010 0.2076189719 - - hypothetical protein POPTR_0004s24080g [Populus trichocarpa]
18 Hb_000271_130 0.2078949615 transcription factor TF Family: C2C2-Dof DNA binding with one finger 2.4, putative [Theobroma cacao]
19 Hb_002043_070 0.2087916762 - - PREDICTED: jacalin-related lectin 19 [Jatropha curcas]
20 Hb_032264_050 0.2093906349 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Jatropha curcas]

Gene co-expression network

sample Hb_010050_040 Hb_010050_040 Hb_000179_060 Hb_000179_060 Hb_010050_040--Hb_000179_060 Hb_129230_010 Hb_129230_010 Hb_010050_040--Hb_129230_010 Hb_002785_010 Hb_002785_010 Hb_010050_040--Hb_002785_010 Hb_000752_040 Hb_000752_040 Hb_010050_040--Hb_000752_040 Hb_005725_160 Hb_005725_160 Hb_010050_040--Hb_005725_160 Hb_003008_020 Hb_003008_020 Hb_010050_040--Hb_003008_020 Hb_000201_010 Hb_000201_010 Hb_000179_060--Hb_000201_010 Hb_000258_230 Hb_000258_230 Hb_000179_060--Hb_000258_230 Hb_002043_070 Hb_002043_070 Hb_000179_060--Hb_002043_070 Hb_009771_040 Hb_009771_040 Hb_000179_060--Hb_009771_040 Hb_002250_140 Hb_002250_140 Hb_000179_060--Hb_002250_140 Hb_005211_210 Hb_005211_210 Hb_000179_060--Hb_005211_210 Hb_129230_010--Hb_002785_010 Hb_000120_200 Hb_000120_200 Hb_129230_010--Hb_000120_200 Hb_000656_030 Hb_000656_030 Hb_129230_010--Hb_000656_030 Hb_034507_050 Hb_034507_050 Hb_129230_010--Hb_034507_050 Hb_000015_230 Hb_000015_230 Hb_129230_010--Hb_000015_230 Hb_003050_330 Hb_003050_330 Hb_002785_010--Hb_003050_330 Hb_032202_010 Hb_032202_010 Hb_002785_010--Hb_032202_010 Hb_000369_040 Hb_000369_040 Hb_002785_010--Hb_000369_040 Hb_001158_250 Hb_001158_250 Hb_002785_010--Hb_001158_250 Hb_002785_010--Hb_000752_040 Hb_007666_010 Hb_007666_010 Hb_002785_010--Hb_007666_010 Hb_000752_040--Hb_032202_010 Hb_000752_040--Hb_003008_020 Hb_000752_040--Hb_007666_010 Hb_000752_040--Hb_003050_330 Hb_005018_030 Hb_005018_030 Hb_000752_040--Hb_005018_030 Hb_001950_100 Hb_001950_100 Hb_005725_160--Hb_001950_100 Hb_001232_040 Hb_001232_040 Hb_005725_160--Hb_001232_040 Hb_009222_080 Hb_009222_080 Hb_005725_160--Hb_009222_080 Hb_003097_220 Hb_003097_220 Hb_005725_160--Hb_003097_220 Hb_000622_030 Hb_000622_030 Hb_005725_160--Hb_000622_030 Hb_002168_070 Hb_002168_070 Hb_005725_160--Hb_002168_070 Hb_003008_020--Hb_003050_330 Hb_008689_010 Hb_008689_010 Hb_003008_020--Hb_008689_010 Hb_036790_110 Hb_036790_110 Hb_003008_020--Hb_036790_110 Hb_077774_010 Hb_077774_010 Hb_003008_020--Hb_077774_010 Hb_002193_080 Hb_002193_080 Hb_003008_020--Hb_002193_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0723184 0.330725 0.138545 0.539488 0.03635 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.647707

CAGE analysis