Hb_010053_030

Information

Type -
Description -
Location Contig10053: 13668-26627
Sequence    

Annotation

kegg
ID rcu:RCOM_0768090
description hypothetical protein
nr
ID XP_012081616.1
description PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase [Jatropha curcas]
swissprot
ID Q5ZLV4
description tRNA (cytosine(34)-C(5))-methyltransferase OS=Gallus gallus GN=NSUN2 PE=2 SV=1
trembl
ID A0A067KD39
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18654 PE=4 SV=1
Gene Ontology
ID GO:0003723
description trna (cytosine -c )-methyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00365: 13744-14146 , PASA_asmbl_00366: 15384-26598
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010053_030 0.0 - - PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase [Jatropha curcas]
2 Hb_000923_080 0.0554236329 - - PREDICTED: eukaryotic translation initiation factor 2A [Jatropha curcas]
3 Hb_000505_020 0.0599339771 - - PREDICTED: protein S-acyltransferase 24 [Jatropha curcas]
4 Hb_104061_020 0.0608588091 - - PREDICTED: UV-stimulated scaffold protein A homolog [Jatropha curcas]
5 Hb_001235_140 0.0642463388 - - PREDICTED: protein arginine N-methyltransferase 1.6 [Jatropha curcas]
6 Hb_000648_100 0.065565774 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]
7 Hb_004096_070 0.0680216186 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Jatropha curcas]
8 Hb_001454_280 0.0683318909 - - PREDICTED: chaperone protein dnaJ 49 [Jatropha curcas]
9 Hb_006478_060 0.0684686718 - - PREDICTED: homocysteine S-methyltransferase 2 isoform X1 [Jatropha curcas]
10 Hb_002078_100 0.0715180777 - - PREDICTED: mannosyl-oligosaccharide glucosidase GCS1-like [Jatropha curcas]
11 Hb_001140_350 0.0742406114 - - PREDICTED: uncharacterized protein LOC105648465 [Jatropha curcas]
12 Hb_001454_320 0.0747453307 - - PREDICTED: protein pleiotropic regulatory locus 1 isoform X1 [Jatropha curcas]
13 Hb_000307_210 0.074775992 - - Transportin 1 isoform 1 [Theobroma cacao]
14 Hb_001621_130 0.0748211502 - - PREDICTED: pumilio homolog 1-like isoform X1 [Jatropha curcas]
15 Hb_002107_070 0.0757143775 - - hypothetical protein RCOM_1598630 [Ricinus communis]
16 Hb_174821_010 0.0757859552 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 14 [Jatropha curcas]
17 Hb_000664_070 0.0759831781 - - PREDICTED: protein cereblon [Jatropha curcas]
18 Hb_000089_120 0.0760997292 - - WD-repeat protein, putative [Ricinus communis]
19 Hb_000010_360 0.0789384946 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Jatropha curcas]
20 Hb_004235_080 0.0789509246 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]

Gene co-expression network

sample Hb_010053_030 Hb_010053_030 Hb_000923_080 Hb_000923_080 Hb_010053_030--Hb_000923_080 Hb_000505_020 Hb_000505_020 Hb_010053_030--Hb_000505_020 Hb_104061_020 Hb_104061_020 Hb_010053_030--Hb_104061_020 Hb_001235_140 Hb_001235_140 Hb_010053_030--Hb_001235_140 Hb_000648_100 Hb_000648_100 Hb_010053_030--Hb_000648_100 Hb_004096_070 Hb_004096_070 Hb_010053_030--Hb_004096_070 Hb_004235_080 Hb_004235_080 Hb_000923_080--Hb_004235_080 Hb_000923_080--Hb_000648_100 Hb_004209_020 Hb_004209_020 Hb_000923_080--Hb_004209_020 Hb_008159_020 Hb_008159_020 Hb_000923_080--Hb_008159_020 Hb_000923_080--Hb_104061_020 Hb_000109_100 Hb_000109_100 Hb_000505_020--Hb_000109_100 Hb_000505_020--Hb_104061_020 Hb_003498_120 Hb_003498_120 Hb_000505_020--Hb_003498_120 Hb_002078_100 Hb_002078_100 Hb_000505_020--Hb_002078_100 Hb_000505_020--Hb_001235_140 Hb_002107_070 Hb_002107_070 Hb_104061_020--Hb_002107_070 Hb_000579_230 Hb_000579_230 Hb_104061_020--Hb_000579_230 Hb_002329_040 Hb_002329_040 Hb_104061_020--Hb_002329_040 Hb_000740_100 Hb_000740_100 Hb_104061_020--Hb_000740_100 Hb_009175_020 Hb_009175_020 Hb_104061_020--Hb_009175_020 Hb_007657_020 Hb_007657_020 Hb_001235_140--Hb_007657_020 Hb_001377_160 Hb_001377_160 Hb_001235_140--Hb_001377_160 Hb_002681_090 Hb_002681_090 Hb_001235_140--Hb_002681_090 Hb_000089_120 Hb_000089_120 Hb_001235_140--Hb_000089_120 Hb_000470_070 Hb_000470_070 Hb_000648_100--Hb_000470_070 Hb_000648_100--Hb_002078_100 Hb_001454_320 Hb_001454_320 Hb_000648_100--Hb_001454_320 Hb_019654_040 Hb_019654_040 Hb_000648_100--Hb_019654_040 Hb_001140_350 Hb_001140_350 Hb_000648_100--Hb_001140_350 Hb_001454_370 Hb_001454_370 Hb_004096_070--Hb_001454_370 Hb_004096_070--Hb_001235_140 Hb_012114_080 Hb_012114_080 Hb_004096_070--Hb_012114_080 Hb_002157_050 Hb_002157_050 Hb_004096_070--Hb_002157_050 Hb_011689_060 Hb_011689_060 Hb_004096_070--Hb_011689_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.4874 19.1975 12.8985 12.3908 23.4044 21.5045
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.7908 7.99612 9.29003 22.7003 8.29905

CAGE analysis