Hb_010053_050

Information

Type -
Description -
Location Contig10053: 35662-43932
Sequence    

Annotation

kegg
ID pop:POPTR_0530s002102
description hypothetical protein
nr
ID XP_006387838.1
description hypothetical protein POPTR_0530s002102g, partial [Populus trichocarpa]
swissprot
ID Q8RXN0
description ABC transporter G family member 11 OS=Arabidopsis thaliana GN=ABCG11 PE=1 SV=1
trembl
ID U7DXB0
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0530s002102g PE=4 SV=1
Gene Ontology
ID GO:0016020
description abc transporter g family member 11-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00370: 37953-38505 , PASA_asmbl_00371: 38854-39180
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010053_050 0.0 - - hypothetical protein POPTR_0530s002102g, partial [Populus trichocarpa]
2 Hb_010053_060 0.0324322435 - - ATP-binding cassette transporter, putative [Ricinus communis]
3 Hb_000284_050 0.0441069212 - - hypothetical protein L484_026849 [Morus notabilis]
4 Hb_004161_040 0.0691590056 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Populus euphratica]
5 Hb_000938_050 0.0765468723 - - hypothetical protein JCGZ_09640 [Jatropha curcas]
6 Hb_131816_010 0.0789641634 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
7 Hb_005622_090 0.0887884524 - - hypothetical protein CICLE_v10027074mg [Citrus clementina]
8 Hb_002395_010 0.0888411544 - - -
9 Hb_012184_020 0.0891130737 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000959_380 0.0895750419 - - PREDICTED: (-)-alpha-terpineol synthase-like [Vitis vinifera]
11 Hb_002041_010 0.0904369454 - - -
12 Hb_000326_100 0.0906774107 transcription factor TF Family: MYB-related DnaJ homolog subfamily C member 2 [Morus notabilis]
13 Hb_001627_070 0.0914051899 transcription factor TF Family: MIKC PREDICTED: developmental protein SEPALLATA 1 [Nelumbo nucifera]
14 Hb_003144_020 0.0927050095 - - (R)-limonene synthase, putative [Ricinus communis]
15 Hb_002835_420 0.0938161024 - - photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]
16 Hb_000574_080 0.0939083101 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
17 Hb_007645_010 0.0955666228 - - NdhE, partial (chloroplast) [Podocalyx loranthoides]
18 Hb_104509_010 0.0956690067 - - photosystem II CP43 chlorophyll apoprotein (chloroplast) [Ficus sp. Moore 315]
19 Hb_006302_050 0.0961543143 - - PREDICTED: uncharacterized protein LOC104804969, partial [Tarenaya hassleriana]
20 Hb_005224_020 0.0982656091 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_010053_050 Hb_010053_050 Hb_010053_060 Hb_010053_060 Hb_010053_050--Hb_010053_060 Hb_000284_050 Hb_000284_050 Hb_010053_050--Hb_000284_050 Hb_004161_040 Hb_004161_040 Hb_010053_050--Hb_004161_040 Hb_000938_050 Hb_000938_050 Hb_010053_050--Hb_000938_050 Hb_131816_010 Hb_131816_010 Hb_010053_050--Hb_131816_010 Hb_005622_090 Hb_005622_090 Hb_010053_050--Hb_005622_090 Hb_010053_060--Hb_000284_050 Hb_010053_060--Hb_131816_010 Hb_010053_060--Hb_000938_050 Hb_010053_060--Hb_004161_040 Hb_000959_380 Hb_000959_380 Hb_010053_060--Hb_000959_380 Hb_002041_010 Hb_002041_010 Hb_000284_050--Hb_002041_010 Hb_000284_050--Hb_004161_040 Hb_000497_310 Hb_000497_310 Hb_000284_050--Hb_000497_310 Hb_000284_050--Hb_000938_050 Hb_007219_010 Hb_007219_010 Hb_004161_040--Hb_007219_010 Hb_059280_010 Hb_059280_010 Hb_004161_040--Hb_059280_010 Hb_002276_110 Hb_002276_110 Hb_004161_040--Hb_002276_110 Hb_000574_080 Hb_000574_080 Hb_004161_040--Hb_000574_080 Hb_005018_050 Hb_005018_050 Hb_000938_050--Hb_005018_050 Hb_003407_050 Hb_003407_050 Hb_000938_050--Hb_003407_050 Hb_031194_030 Hb_031194_030 Hb_000938_050--Hb_031194_030 Hb_003120_090 Hb_003120_090 Hb_000938_050--Hb_003120_090 Hb_002704_090 Hb_002704_090 Hb_000938_050--Hb_002704_090 Hb_002835_420 Hb_002835_420 Hb_000938_050--Hb_002835_420 Hb_131816_010--Hb_000959_380 Hb_104509_010 Hb_104509_010 Hb_131816_010--Hb_104509_010 Hb_006302_050 Hb_006302_050 Hb_131816_010--Hb_006302_050 Hb_003144_020 Hb_003144_020 Hb_131816_010--Hb_003144_020 Hb_005224_020 Hb_005224_020 Hb_131816_010--Hb_005224_020 Hb_005914_030 Hb_005914_030 Hb_131816_010--Hb_005914_030 Hb_002395_010 Hb_002395_010 Hb_005622_090--Hb_002395_010 Hb_012184_020 Hb_012184_020 Hb_005622_090--Hb_012184_020 Hb_001627_070 Hb_001627_070 Hb_005622_090--Hb_001627_070 Hb_005622_090--Hb_000574_080 Hb_010172_020 Hb_010172_020 Hb_005622_090--Hb_010172_020 Hb_005622_090--Hb_005224_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.140749 0.0104983 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.104234 7.06369

CAGE analysis