Hb_010068_020

Information

Type -
Description -
Location Contig10068: 9147-13720
Sequence    

Annotation

kegg
ID gmx:100789832
description uncharacterized LOC100789832
nr
ID XP_012070837.1
description PREDICTED: uncharacterized protein LOC105632966 [Jatropha curcas]
swissprot
ID Q54MV7
description NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Dictyostelium discoideum GN=ndufa12 PE=2 SV=2
trembl
ID A0A067KSL9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00894 PE=4 SV=1
Gene Ontology
ID GO:0016020
description nadh:ubiquinone subunit isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00431: 9123-13754 , PASA_asmbl_00432: 11509-13694
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010068_020 0.0 - - PREDICTED: uncharacterized protein LOC105632966 [Jatropha curcas]
2 Hb_004375_100 0.0536011532 - - PREDICTED: 60S ribosomal protein L19-1 [Jatropha curcas]
3 Hb_002056_050 0.0579849863 - - PREDICTED: uncharacterized protein LOC105130744 [Populus euphratica]
4 Hb_000384_100 0.064819511 - - hydrolase, putative [Ricinus communis]
5 Hb_002043_130 0.0722188385 - - PREDICTED: 60S ribosomal protein L28-2-like [Jatropha curcas]
6 Hb_004216_050 0.0739573349 - - PREDICTED: uncharacterized protein LOC105628422 [Jatropha curcas]
7 Hb_004157_030 0.0744637779 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
8 Hb_004567_120 0.0751385901 - - PREDICTED: 60S ribosomal protein L13a-4-like [Jatropha curcas]
9 Hb_000373_120 0.0752167606 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105629120 [Jatropha curcas]
10 Hb_156947_010 0.075923105 - - kinase-like protein pac.x.7.4, partial [Platanus x acerifolia]
11 Hb_001814_050 0.0780566244 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
12 Hb_000172_320 0.0781985153 - - PREDICTED: ribosome biogenesis protein TSR3 homolog [Jatropha curcas]
13 Hb_004767_080 0.0790856675 - - PREDICTED: mitochondrial ATPase complex subunit ATP10 isoform X1 [Jatropha curcas]
14 Hb_000479_090 0.0794475045 - - PREDICTED: zinc finger RNA-binding protein [Jatropha curcas]
15 Hb_000920_110 0.0802569177 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
16 Hb_003226_100 0.0804466011 - - PREDICTED: 60S ribosomal protein L18-2 [Jatropha curcas]
17 Hb_002701_240 0.084117333 - - PREDICTED: putative DNA helicase INO80 [Jatropha curcas]
18 Hb_011150_010 0.0845572404 - - PREDICTED: uncharacterized RNA-binding protein C1827.05c [Jatropha curcas]
19 Hb_002713_070 0.0847560153 - - hypothetical protein POPTR_0002s21620g [Populus trichocarpa]
20 Hb_000441_110 0.0884788473 - - PREDICTED: uncharacterized protein LOC105646523 [Jatropha curcas]

Gene co-expression network

sample Hb_010068_020 Hb_010068_020 Hb_004375_100 Hb_004375_100 Hb_010068_020--Hb_004375_100 Hb_002056_050 Hb_002056_050 Hb_010068_020--Hb_002056_050 Hb_000384_100 Hb_000384_100 Hb_010068_020--Hb_000384_100 Hb_002043_130 Hb_002043_130 Hb_010068_020--Hb_002043_130 Hb_004216_050 Hb_004216_050 Hb_010068_020--Hb_004216_050 Hb_004157_030 Hb_004157_030 Hb_010068_020--Hb_004157_030 Hb_002701_240 Hb_002701_240 Hb_004375_100--Hb_002701_240 Hb_002713_070 Hb_002713_070 Hb_004375_100--Hb_002713_070 Hb_001814_050 Hb_001814_050 Hb_004375_100--Hb_001814_050 Hb_156947_010 Hb_156947_010 Hb_004375_100--Hb_156947_010 Hb_001505_020 Hb_001505_020 Hb_004375_100--Hb_001505_020 Hb_000920_110 Hb_000920_110 Hb_002056_050--Hb_000920_110 Hb_003226_100 Hb_003226_100 Hb_002056_050--Hb_003226_100 Hb_003540_240 Hb_003540_240 Hb_002056_050--Hb_003540_240 Hb_000172_320 Hb_000172_320 Hb_002056_050--Hb_000172_320 Hb_001484_070 Hb_001484_070 Hb_002056_050--Hb_001484_070 Hb_000479_090 Hb_000479_090 Hb_000384_100--Hb_000479_090 Hb_000059_370 Hb_000059_370 Hb_000384_100--Hb_000059_370 Hb_002183_090 Hb_002183_090 Hb_000384_100--Hb_002183_090 Hb_000230_510 Hb_000230_510 Hb_000384_100--Hb_000230_510 Hb_000384_100--Hb_000920_110 Hb_002043_130--Hb_000172_320 Hb_002043_130--Hb_001814_050 Hb_009793_010 Hb_009793_010 Hb_002043_130--Hb_009793_010 Hb_002043_130--Hb_004375_100 Hb_011150_010 Hb_011150_010 Hb_002043_130--Hb_011150_010 Hb_004567_120 Hb_004567_120 Hb_004216_050--Hb_004567_120 Hb_005305_150 Hb_005305_150 Hb_004216_050--Hb_005305_150 Hb_006478_150 Hb_006478_150 Hb_004216_050--Hb_006478_150 Hb_000496_120 Hb_000496_120 Hb_004216_050--Hb_000496_120 Hb_004767_080 Hb_004767_080 Hb_004216_050--Hb_004767_080 Hb_004157_030--Hb_003226_100 Hb_003018_020 Hb_003018_020 Hb_004157_030--Hb_003018_020 Hb_004157_030--Hb_001814_050 Hb_000134_070 Hb_000134_070 Hb_004157_030--Hb_000134_070 Hb_000506_070 Hb_000506_070 Hb_004157_030--Hb_000506_070 Hb_174865_010 Hb_174865_010 Hb_004157_030--Hb_174865_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.4822 4.59364 7.11633 8.03186 9.4027 12.4079
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.4086 32.6077 12.5049 14.1435 8.70508

CAGE analysis