Hb_010068_040

Information

Type -
Description -
Location Contig10068: 32016-35782
Sequence    

Annotation

kegg
ID tcc:TCM_030872
description RNI-like superfamily protein isoform 1
nr
ID XP_012070833.1
description PREDICTED: uncharacterized protein LOC105632964 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L3Q9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00892 PE=4 SV=1
Gene Ontology
ID GO:0009644
description rni-like superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00435: 32099-35767 , PASA_asmbl_00437: 33984-34291
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010068_040 0.0 - - PREDICTED: uncharacterized protein LOC105632964 [Jatropha curcas]
2 Hb_000174_110 0.0565297082 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
3 Hb_033153_070 0.06004447 - - PREDICTED: uncharacterized protein LOC105649606 isoform X1 [Jatropha curcas]
4 Hb_000334_270 0.0623512892 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
5 Hb_002175_030 0.0643016809 - - PREDICTED: snRNA-activating protein complex subunit isoform X2 [Jatropha curcas]
6 Hb_003029_030 0.0674394957 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
7 Hb_001433_070 0.0684767988 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1 [Jatropha curcas]
8 Hb_004032_430 0.070503378 - - PREDICTED: uncharacterized protein LOC105635169 [Jatropha curcas]
9 Hb_120410_010 0.0709758007 - - PREDICTED: vesicle-associated membrane protein 727-like [Solanum tuberosum]
10 Hb_008453_140 0.0727254521 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
11 Hb_033720_010 0.0728694783 - - PREDICTED: uncharacterized protein LOC105648843 [Jatropha curcas]
12 Hb_131646_010 0.0733181056 - - protein arginine n-methyltransferase, putative [Ricinus communis]
13 Hb_002296_050 0.0739169722 - - hypothetical protein AMTR_s00001p00247600 [Amborella trichopoda]
14 Hb_004310_150 0.0739503954 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
15 Hb_012753_170 0.0755954373 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like isoform X2 [Jatropha curcas]
16 Hb_006620_020 0.0779541995 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
17 Hb_001486_340 0.0787637066 - - PREDICTED: double-stranded RNA-binding protein 1-like [Jatropha curcas]
18 Hb_079526_030 0.0796154343 - - PREDICTED: uncharacterized protein LOC105638120 [Jatropha curcas]
19 Hb_008103_070 0.079977405 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
20 Hb_004785_100 0.0804506935 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_010068_040 Hb_010068_040 Hb_000174_110 Hb_000174_110 Hb_010068_040--Hb_000174_110 Hb_033153_070 Hb_033153_070 Hb_010068_040--Hb_033153_070 Hb_000334_270 Hb_000334_270 Hb_010068_040--Hb_000334_270 Hb_002175_030 Hb_002175_030 Hb_010068_040--Hb_002175_030 Hb_003029_030 Hb_003029_030 Hb_010068_040--Hb_003029_030 Hb_001433_070 Hb_001433_070 Hb_010068_040--Hb_001433_070 Hb_006620_020 Hb_006620_020 Hb_000174_110--Hb_006620_020 Hb_005618_160 Hb_005618_160 Hb_000174_110--Hb_005618_160 Hb_054865_100 Hb_054865_100 Hb_000174_110--Hb_054865_100 Hb_000174_110--Hb_002175_030 Hb_001486_340 Hb_001486_340 Hb_000174_110--Hb_001486_340 Hb_033153_070--Hb_000334_270 Hb_000649_070 Hb_000649_070 Hb_033153_070--Hb_000649_070 Hb_033720_010 Hb_033720_010 Hb_033153_070--Hb_033720_010 Hb_033153_070--Hb_002175_030 Hb_000959_270 Hb_000959_270 Hb_033153_070--Hb_000959_270 Hb_000926_190 Hb_000926_190 Hb_000334_270--Hb_000926_190 Hb_003849_060 Hb_003849_060 Hb_000334_270--Hb_003849_060 Hb_006355_010 Hb_006355_010 Hb_000334_270--Hb_006355_010 Hb_000334_270--Hb_002175_030 Hb_002175_030--Hb_001433_070 Hb_156973_010 Hb_156973_010 Hb_002175_030--Hb_156973_010 Hb_000853_230 Hb_000853_230 Hb_002175_030--Hb_000853_230 Hb_001089_110 Hb_001089_110 Hb_002175_030--Hb_001089_110 Hb_002175_030--Hb_006620_020 Hb_002686_250 Hb_002686_250 Hb_003029_030--Hb_002686_250 Hb_131646_010 Hb_131646_010 Hb_003029_030--Hb_131646_010 Hb_003029_030--Hb_033720_010 Hb_001408_100 Hb_001408_100 Hb_003029_030--Hb_001408_100 Hb_002351_020 Hb_002351_020 Hb_003029_030--Hb_002351_020 Hb_079526_030 Hb_079526_030 Hb_001433_070--Hb_079526_030 Hb_001433_070--Hb_001089_110 Hb_002110_230 Hb_002110_230 Hb_001433_070--Hb_002110_230 Hb_003878_110 Hb_003878_110 Hb_001433_070--Hb_003878_110 Hb_183612_040 Hb_183612_040 Hb_001433_070--Hb_183612_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.6761 9.59714 11.1442 7.17529 15.6286 14.5076
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.494 12.8447 5.5534 8.0935 6.6005

CAGE analysis