Hb_010068_050

Information

Type -
Description -
Location Contig10068: 36576-40212
Sequence    

Annotation

kegg
ID rcu:RCOM_0082390
description hypothetical protein
nr
ID XP_012070832.1
description PREDICTED: uncharacterized protein LOC105632963 [Jatropha curcas]
swissprot
ID Q9H6D7
description HAUS augmin-like complex subunit 4 OS=Homo sapiens GN=HAUS4 PE=1 SV=1
trembl
ID A0A067L4X6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00891 PE=4 SV=1
Gene Ontology
ID GO:0005876
description PREDICTED: uncharacterized protein LOC105632963

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00438: 39756-39977
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010068_050 0.0 - - PREDICTED: uncharacterized protein LOC105632963 [Jatropha curcas]
2 Hb_005288_060 0.1567891964 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like isoform X1 [Citrus sinensis]
3 Hb_000414_180 0.1750430603 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X2 [Vitis vinifera]
4 Hb_007130_010 0.1799762034 - - -
5 Hb_172939_010 0.1811875479 - - unknown [Picea sitchensis]
6 Hb_006594_080 0.1821387055 - - beta-glucosidase, putative [Ricinus communis]
7 Hb_000875_070 0.1838002747 - - -
8 Hb_002518_180 0.183982229 - - hypothetical protein POPTR_0001s25460g [Populus trichocarpa]
9 Hb_033594_100 0.186600762 transcription factor TF Family: GNAT PREDICTED: probable amino-acid acetyltransferase NAGS1, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_021854_020 0.1896785553 - - hypothetical protein POPTR_1763s00200g, partial [Populus trichocarpa]
11 Hb_000120_880 0.1906093025 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
12 Hb_025668_020 0.1963410294 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000330_150 0.200037323 - - PREDICTED: dihydroflavonol-4-reductase-like [Jatropha curcas]
14 Hb_002217_390 0.2007232493 - - PREDICTED: galactokinase [Jatropha curcas]
15 Hb_000138_020 0.2048763307 - - PREDICTED: peroxidase A2-like [Jatropha curcas]
16 Hb_044380_020 0.2082570351 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
17 Hb_001677_230 0.2082933884 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
18 Hb_062013_010 0.2087076614 - - phosphoprotein phosphatase, putative [Ricinus communis]
19 Hb_003640_010 0.2109691796 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
20 Hb_000313_230 0.2116032976 - - PREDICTED: uncharacterized protein LOC105636893 [Jatropha curcas]

Gene co-expression network

sample Hb_010068_050 Hb_010068_050 Hb_005288_060 Hb_005288_060 Hb_010068_050--Hb_005288_060 Hb_000414_180 Hb_000414_180 Hb_010068_050--Hb_000414_180 Hb_007130_010 Hb_007130_010 Hb_010068_050--Hb_007130_010 Hb_172939_010 Hb_172939_010 Hb_010068_050--Hb_172939_010 Hb_006594_080 Hb_006594_080 Hb_010068_050--Hb_006594_080 Hb_000875_070 Hb_000875_070 Hb_010068_050--Hb_000875_070 Hb_005288_060--Hb_006594_080 Hb_000313_230 Hb_000313_230 Hb_005288_060--Hb_000313_230 Hb_005288_060--Hb_000414_180 Hb_000574_250 Hb_000574_250 Hb_005288_060--Hb_000574_250 Hb_002874_030 Hb_002874_030 Hb_005288_060--Hb_002874_030 Hb_062013_010 Hb_062013_010 Hb_000414_180--Hb_062013_010 Hb_001793_030 Hb_001793_030 Hb_000414_180--Hb_001793_030 Hb_000329_080 Hb_000329_080 Hb_000414_180--Hb_000329_080 Hb_001080_150 Hb_001080_150 Hb_000414_180--Hb_001080_150 Hb_000454_160 Hb_000454_160 Hb_000414_180--Hb_000454_160 Hb_000137_060 Hb_000137_060 Hb_007130_010--Hb_000137_060 Hb_000567_150 Hb_000567_150 Hb_007130_010--Hb_000567_150 Hb_004310_170 Hb_004310_170 Hb_007130_010--Hb_004310_170 Hb_000751_070 Hb_000751_070 Hb_007130_010--Hb_000751_070 Hb_000465_180 Hb_000465_180 Hb_007130_010--Hb_000465_180 Hb_001288_050 Hb_001288_050 Hb_007130_010--Hb_001288_050 Hb_000120_880 Hb_000120_880 Hb_172939_010--Hb_000120_880 Hb_172939_010--Hb_004310_170 Hb_025668_020 Hb_025668_020 Hb_172939_010--Hb_025668_020 Hb_003640_010 Hb_003640_010 Hb_172939_010--Hb_003640_010 Hb_002122_050 Hb_002122_050 Hb_172939_010--Hb_002122_050 Hb_168386_010 Hb_168386_010 Hb_172939_010--Hb_168386_010 Hb_005332_050 Hb_005332_050 Hb_006594_080--Hb_005332_050 Hb_003992_220 Hb_003992_220 Hb_006594_080--Hb_003992_220 Hb_167211_010 Hb_167211_010 Hb_006594_080--Hb_167211_010 Hb_000442_170 Hb_000442_170 Hb_006594_080--Hb_000442_170 Hb_006594_080--Hb_000313_230 Hb_001304_130 Hb_001304_130 Hb_000875_070--Hb_001304_130 Hb_002518_180 Hb_002518_180 Hb_000875_070--Hb_002518_180 Hb_147218_010 Hb_147218_010 Hb_000875_070--Hb_147218_010 Hb_000019_010 Hb_000019_010 Hb_000875_070--Hb_000019_010 Hb_044380_020 Hb_044380_020 Hb_000875_070--Hb_044380_020 Hb_005217_040 Hb_005217_040 Hb_000875_070--Hb_005217_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0877764 0.145785 0.174739 0.635733 0.0504941 0.0337974
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0630725 0.117391 1.36412 1.24074

CAGE analysis