Hb_010068_060

Information

Type -
Description -
Location Contig10068: 43173-44294
Sequence    

Annotation

kegg
ID sot:102580608
description protein translation factor SUI1 homolog
nr
ID NP_001295722.1
description protein translation factor SUI1 homolog 2 [Jatropha curcas]
swissprot
ID P56330
description Protein translation factor SUI1 homolog OS=Zea mays GN=TIF PE=3 SV=1
trembl
ID D6BR70
description Translation initiation factor-like protein OS=Jatropha curcas GN=JCGZ_00890 PE=2 SV=1
Gene Ontology
ID GO:0003743
description translation factor sui1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00439: 43172-44278
cDNA
(Sanger)
(ID:Location)		 017_O11.ab1: 43172-44277

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010068_060 0.0 - - protein translation factor SUI1 homolog 2 [Jatropha curcas]
2 Hb_098315_070 0.1734986903 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105636030 isoform X1 [Jatropha curcas]
3 Hb_032202_170 0.1864336195 - - PREDICTED: uncharacterized protein LOC105643056 [Jatropha curcas]
4 Hb_004635_130 0.201837329 - - PREDICTED: probable small nuclear ribonucleoprotein G [Populus euphratica]
5 Hb_000163_240 0.2053829406 - - PREDICTED: protein OPI10 homolog [Jatropha curcas]
6 Hb_000008_230 0.2056790701 - - hypothetical protein POPTR_0004s22120g [Populus trichocarpa]
7 Hb_002344_090 0.2134549911 - - PREDICTED: uncharacterized protein LOC105637976 [Jatropha curcas]
8 Hb_001310_110 0.21515011 - - unnamed protein product [Coffea canephora]
9 Hb_002473_040 0.2154236753 - - PREDICTED: rRNA methyltransferase 3B, mitochondrial [Jatropha curcas]
10 Hb_000755_080 0.215556916 - - hypothetical protein RCOM_1016710 [Ricinus communis]
11 Hb_002267_090 0.2205897444 - - Cytochrome c oxidase assembly protein COX19, putative [Ricinus communis]
12 Hb_013394_060 0.2215379491 - - PREDICTED: IST1-like protein isoform X1 [Jatropha curcas]
13 Hb_004512_020 0.2245717315 - - PREDICTED: tetratricopeptide repeat protein 1 [Jatropha curcas]
14 Hb_025669_020 0.2249720923 - - conserved hypothetical protein [Ricinus communis]
15 Hb_156144_030 0.2251168617 - - hypothetical protein RCOM_0187400 [Ricinus communis]
16 Hb_003125_140 0.2254731809 - - PREDICTED: uncharacterized protein LOC105648796 [Jatropha curcas]
17 Hb_051017_010 0.225483782 - - Uncharacterized protein TCM_031047 [Theobroma cacao]
18 Hb_001051_090 0.2257041093 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 11 [Jatropha curcas]
19 Hb_030565_080 0.2259954978 - - PREDICTED: Werner Syndrome-like exonuclease [Jatropha curcas]
20 Hb_000661_160 0.2283855292 - - hexokinase [Manihot esculenta]

Gene co-expression network

sample Hb_010068_060 Hb_010068_060 Hb_098315_070 Hb_098315_070 Hb_010068_060--Hb_098315_070 Hb_032202_170 Hb_032202_170 Hb_010068_060--Hb_032202_170 Hb_004635_130 Hb_004635_130 Hb_010068_060--Hb_004635_130 Hb_000163_240 Hb_000163_240 Hb_010068_060--Hb_000163_240 Hb_000008_230 Hb_000008_230 Hb_010068_060--Hb_000008_230 Hb_002344_090 Hb_002344_090 Hb_010068_060--Hb_002344_090 Hb_000453_040 Hb_000453_040 Hb_098315_070--Hb_000453_040 Hb_002042_030 Hb_002042_030 Hb_098315_070--Hb_002042_030 Hb_002232_190 Hb_002232_190 Hb_098315_070--Hb_002232_190 Hb_003994_140 Hb_003994_140 Hb_098315_070--Hb_003994_140 Hb_000265_220 Hb_000265_220 Hb_098315_070--Hb_000265_220 Hb_002896_060 Hb_002896_060 Hb_098315_070--Hb_002896_060 Hb_000787_090 Hb_000787_090 Hb_032202_170--Hb_000787_090 Hb_132697_010 Hb_132697_010 Hb_032202_170--Hb_132697_010 Hb_004724_320 Hb_004724_320 Hb_032202_170--Hb_004724_320 Hb_010368_020 Hb_010368_020 Hb_032202_170--Hb_010368_020 Hb_003656_110 Hb_003656_110 Hb_032202_170--Hb_003656_110 Hb_000861_070 Hb_000861_070 Hb_032202_170--Hb_000861_070 Hb_000755_080 Hb_000755_080 Hb_004635_130--Hb_000755_080 Hb_001051_090 Hb_001051_090 Hb_004635_130--Hb_001051_090 Hb_003327_030 Hb_003327_030 Hb_004635_130--Hb_003327_030 Hb_004635_130--Hb_000787_090 Hb_004635_130--Hb_002896_060 Hb_002814_120 Hb_002814_120 Hb_004635_130--Hb_002814_120 Hb_001898_240 Hb_001898_240 Hb_000163_240--Hb_001898_240 Hb_003682_030 Hb_003682_030 Hb_000163_240--Hb_003682_030 Hb_010998_040 Hb_010998_040 Hb_000163_240--Hb_010998_040 Hb_003666_020 Hb_003666_020 Hb_000163_240--Hb_003666_020 Hb_004648_090 Hb_004648_090 Hb_000163_240--Hb_004648_090 Hb_001804_110 Hb_001804_110 Hb_000163_240--Hb_001804_110 Hb_008749_050 Hb_008749_050 Hb_000008_230--Hb_008749_050 Hb_001769_020 Hb_001769_020 Hb_000008_230--Hb_001769_020 Hb_012340_020 Hb_012340_020 Hb_000008_230--Hb_012340_020 Hb_000008_230--Hb_002344_090 Hb_035947_010 Hb_035947_010 Hb_000008_230--Hb_035947_010 Hb_002374_440 Hb_002374_440 Hb_000008_230--Hb_002374_440 Hb_002344_090--Hb_012340_020 Hb_106321_030 Hb_106321_030 Hb_002344_090--Hb_106321_030 Hb_000122_250 Hb_000122_250 Hb_002344_090--Hb_000122_250 Hb_010068_030 Hb_010068_030 Hb_002344_090--Hb_010068_030 Hb_013394_060 Hb_013394_060 Hb_002344_090--Hb_013394_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
133.474 208.246 337.111 296.847 986.611 244.653
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
134.513 294.987 107.061 20.0087 67.5391

CAGE analysis