Hb_010079_030

Information

Type -
Description -
Location Contig10079: 20294-22156
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00464: 21658-21918
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010079_030 0.0 - - -
2 Hb_010921_030 0.1276846815 transcription factor TF Family: PHD PREDICTED: PHD finger protein At2g01810 [Jatropha curcas]
3 Hb_000256_140 0.1438965515 - - PREDICTED: uncharacterized protein LOC105637585 isoform X1 [Jatropha curcas]
4 Hb_003728_040 0.1470292324 - - PREDICTED: uncharacterized protein LOC101492305 [Cicer arietinum]
5 Hb_001766_020 0.1485085718 - - PREDICTED: probable galacturonosyltransferase 14 [Populus euphratica]
6 Hb_000347_120 0.1510142887 - - PREDICTED: uncharacterized protein LOC105631363 [Jatropha curcas]
7 Hb_000373_100 0.1512515262 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]
8 Hb_004218_090 0.1535944879 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
9 Hb_004440_040 0.1571919707 - - ubiquitin-protein ligase, putative [Ricinus communis]
10 Hb_003055_140 0.1613904177 transcription factor TF Family: SNF2 PREDICTED: uncharacterized protein LOC105649495 [Jatropha curcas]
11 Hb_000512_010 0.1617852268 - - PREDICTED: uncharacterized protein LOC105650728 [Jatropha curcas]
12 Hb_005288_010 0.1625563643 - - ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_000363_400 0.1625947836 - - PREDICTED: protein HOMOLOG OF MAMMALIAN LYST-INTERACTING PROTEIN 5 [Jatropha curcas]
14 Hb_000953_050 0.164110991 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629451 [Jatropha curcas]
15 Hb_005389_160 0.1645142503 - - PREDICTED: casein kinase I [Jatropha curcas]
16 Hb_000442_010 0.1649066242 - - hypothetical protein POPTR_0010s19060g [Populus trichocarpa]
17 Hb_001104_170 0.1668111032 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-2c [Jatropha curcas]
18 Hb_001205_030 0.1682386281 transcription factor TF Family: zf-HD hypothetical protein POPTR_0007s12970g [Populus trichocarpa]
19 Hb_000634_070 0.1702295519 - - PREDICTED: probable receptor-like protein kinase At5g47070 [Jatropha curcas]
20 Hb_000094_320 0.1704928375 - - hypothetical protein JCGZ_04407 [Jatropha curcas]

Gene co-expression network

sample Hb_010079_030 Hb_010079_030 Hb_010921_030 Hb_010921_030 Hb_010079_030--Hb_010921_030 Hb_000256_140 Hb_000256_140 Hb_010079_030--Hb_000256_140 Hb_003728_040 Hb_003728_040 Hb_010079_030--Hb_003728_040 Hb_001766_020 Hb_001766_020 Hb_010079_030--Hb_001766_020 Hb_000347_120 Hb_000347_120 Hb_010079_030--Hb_000347_120 Hb_000373_100 Hb_000373_100 Hb_010079_030--Hb_000373_100 Hb_001205_030 Hb_001205_030 Hb_010921_030--Hb_001205_030 Hb_000953_050 Hb_000953_050 Hb_010921_030--Hb_000953_050 Hb_000243_380 Hb_000243_380 Hb_010921_030--Hb_000243_380 Hb_029223_050 Hb_029223_050 Hb_010921_030--Hb_029223_050 Hb_000003_550 Hb_000003_550 Hb_010921_030--Hb_000003_550 Hb_003752_100 Hb_003752_100 Hb_010921_030--Hb_003752_100 Hb_005288_010 Hb_005288_010 Hb_000256_140--Hb_005288_010 Hb_000322_150 Hb_000322_150 Hb_000256_140--Hb_000322_150 Hb_002411_030 Hb_002411_030 Hb_000256_140--Hb_002411_030 Hb_004440_040 Hb_004440_040 Hb_000256_140--Hb_004440_040 Hb_000307_190 Hb_000307_190 Hb_000256_140--Hb_000307_190 Hb_002636_100 Hb_002636_100 Hb_000256_140--Hb_002636_100 Hb_003055_140 Hb_003055_140 Hb_003728_040--Hb_003055_140 Hb_003728_040--Hb_001766_020 Hb_000442_010 Hb_000442_010 Hb_003728_040--Hb_000442_010 Hb_003728_040--Hb_004440_040 Hb_001104_170 Hb_001104_170 Hb_003728_040--Hb_001104_170 Hb_003728_040--Hb_000347_120 Hb_001766_020--Hb_001104_170 Hb_001766_020--Hb_000442_010 Hb_001766_020--Hb_004440_040 Hb_000905_210 Hb_000905_210 Hb_001766_020--Hb_000905_210 Hb_005389_160 Hb_005389_160 Hb_001766_020--Hb_005389_160 Hb_000347_120--Hb_000373_100 Hb_000347_120--Hb_005389_160 Hb_010417_070 Hb_010417_070 Hb_000347_120--Hb_010417_070 Hb_000347_120--Hb_004440_040 Hb_000094_320 Hb_000094_320 Hb_000347_120--Hb_000094_320 Hb_004410_070 Hb_004410_070 Hb_000347_120--Hb_004410_070 Hb_000373_100--Hb_005389_160 Hb_007054_040 Hb_007054_040 Hb_000373_100--Hb_007054_040 Hb_000703_200 Hb_000703_200 Hb_000373_100--Hb_000703_200 Hb_000373_100--Hb_010417_070 Hb_001545_150 Hb_001545_150 Hb_000373_100--Hb_001545_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.76222 4.31572 1.09426 0.606869 1.13975 0.260805
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.775291 0.974383 1.21467 1.43068 0.669122

CAGE analysis