Hb_010080_060

Information

Type -
Description -
Location Contig10080: 74794-81842
Sequence    

Annotation

kegg
ID rcu:RCOM_1600650
description receptor protein kinase, putative
nr
ID XP_002510650.1
description receptor protein kinase, putative [Ricinus communis]
swissprot
ID Q944A7
description Probable serine/threonine-protein kinase At4g35230 OS=Arabidopsis thaliana GN=At4g35230 PE=1 SV=1
trembl
ID B9R8K7
description Receptor protein kinase, putative OS=Ricinus communis GN=RCOM_1600650 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable serine threonine-protein kinase at4g35230

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00506: 74831-81854 , PASA_asmbl_00507: 80902-81627
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010080_060 0.0 - - receptor protein kinase, putative [Ricinus communis]
2 Hb_004310_050 0.0737381522 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
3 Hb_000227_380 0.0788004681 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]
4 Hb_033152_080 0.0867702315 - - RNA-binding protein Nova-1, putative [Ricinus communis]
5 Hb_000002_440 0.0882265871 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
6 Hb_000997_090 0.0883236513 - - PREDICTED: uncharacterized protein LOC105632095 [Jatropha curcas]
7 Hb_005122_080 0.0892335474 - - prokaryotic DNA topoisomerase, putative [Ricinus communis]
8 Hb_000046_450 0.0914560663 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
9 Hb_175338_020 0.091711802 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
10 Hb_000821_010 0.0949342092 - - PREDICTED: auxin response factor 19-like [Jatropha curcas]
11 Hb_000997_030 0.0951053566 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
12 Hb_003866_020 0.0954524171 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000529_260 0.0962910364 - - PREDICTED: protein SGT1 homolog At5g65490 [Jatropha curcas]
14 Hb_011861_070 0.0964167094 - - F-box/LRR-repeat protein, putative [Ricinus communis]
15 Hb_000865_080 0.097653926 - - arsenite-resistance protein, putative [Ricinus communis]
16 Hb_004734_060 0.0977687286 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
17 Hb_022408_010 0.0978139438 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
18 Hb_003935_030 0.0982541578 - - PREDICTED: 14-3-3-like protein GF14 kappa isoform X2 [Jatropha curcas]
19 Hb_000342_090 0.0983074854 - - PREDICTED: serine hydroxymethyltransferase 3, chloroplastic [Jatropha curcas]
20 Hb_031754_010 0.0985396559 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_010080_060 Hb_010080_060 Hb_004310_050 Hb_004310_050 Hb_010080_060--Hb_004310_050 Hb_000227_380 Hb_000227_380 Hb_010080_060--Hb_000227_380 Hb_033152_080 Hb_033152_080 Hb_010080_060--Hb_033152_080 Hb_000002_440 Hb_000002_440 Hb_010080_060--Hb_000002_440 Hb_000997_090 Hb_000997_090 Hb_010080_060--Hb_000997_090 Hb_005122_080 Hb_005122_080 Hb_010080_060--Hb_005122_080 Hb_000046_450 Hb_000046_450 Hb_004310_050--Hb_000046_450 Hb_000699_250 Hb_000699_250 Hb_004310_050--Hb_000699_250 Hb_000865_080 Hb_000865_080 Hb_004310_050--Hb_000865_080 Hb_008714_020 Hb_008714_020 Hb_004310_050--Hb_008714_020 Hb_006816_300 Hb_006816_300 Hb_004310_050--Hb_006816_300 Hb_003866_020 Hb_003866_020 Hb_000227_380--Hb_003866_020 Hb_007849_020 Hb_007849_020 Hb_000227_380--Hb_007849_020 Hb_175338_020 Hb_175338_020 Hb_000227_380--Hb_175338_020 Hb_000239_070 Hb_000239_070 Hb_000227_380--Hb_000239_070 Hb_000227_380--Hb_000002_440 Hb_001080_270 Hb_001080_270 Hb_000227_380--Hb_001080_270 Hb_004734_060 Hb_004734_060 Hb_033152_080--Hb_004734_060 Hb_000803_190 Hb_000803_190 Hb_033152_080--Hb_000803_190 Hb_000953_010 Hb_000953_010 Hb_033152_080--Hb_000953_010 Hb_000808_180 Hb_000808_180 Hb_033152_080--Hb_000808_180 Hb_000184_130 Hb_000184_130 Hb_033152_080--Hb_000184_130 Hb_000209_020 Hb_000209_020 Hb_033152_080--Hb_000209_020 Hb_025477_060 Hb_025477_060 Hb_000002_440--Hb_025477_060 Hb_000813_100 Hb_000813_100 Hb_000002_440--Hb_000813_100 Hb_000096_180 Hb_000096_180 Hb_000002_440--Hb_000096_180 Hb_000594_020 Hb_000594_020 Hb_000002_440--Hb_000594_020 Hb_002883_010 Hb_002883_010 Hb_000002_440--Hb_002883_010 Hb_156850_030 Hb_156850_030 Hb_000997_090--Hb_156850_030 Hb_000032_320 Hb_000032_320 Hb_000997_090--Hb_000032_320 Hb_000364_180 Hb_000364_180 Hb_000997_090--Hb_000364_180 Hb_000077_070 Hb_000077_070 Hb_000997_090--Hb_000077_070 Hb_004055_040 Hb_004055_040 Hb_000997_090--Hb_004055_040 Hb_029142_010 Hb_029142_010 Hb_005122_080--Hb_029142_010 Hb_002163_010 Hb_002163_010 Hb_005122_080--Hb_002163_010 Hb_001633_040 Hb_001633_040 Hb_005122_080--Hb_001633_040 Hb_031042_070 Hb_031042_070 Hb_005122_080--Hb_031042_070 Hb_005494_020 Hb_005494_020 Hb_005122_080--Hb_005494_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
78.9955 71.4011 16.6425 19.9963 83.1851 94.454
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.1887 18.6854 46.628 55.0217 15.2553

CAGE analysis